BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491783
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29770.2 | Symbols: | Target of trans acting-siR480/255. | ... 1351 0.0
AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 643 0.0
AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 636 0.0
AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 63.9 3e-09
> AT4G29770.2 | Symbols: | Target of trans acting-siR480/255.
| chr4:14575718-14577643 FORWARD LENGTH=1168
Length=1168
Score = 1351 bits (731), Expect = 0.0
Identities = 956/1062 (90%), Gaps = 26/1062 (2%)
Strand=Plus/Plus
Query 1 TGAGTTTTCTCTACGCGACGGCGATCTGTGTCTCCGGAGTTAATCGCTGATGGAGTCATT 60
|||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 108 TGAGTTTTCTCTACGCGACGTAGATCTGTGTCTCCGGAGTTCATCGCAGATGGAGTCATT 167
Query 61 ATTACAAACTTTTG-AAGAAACGGCTGGCTTATGTCATCCAGATTGCGTGAAAGCAAGCA 119
||| || ||||| || |||| |||| ||||||||| |||||| | ||||||| ||
Sbjct 168 GTTAGAATGTTTTGCAA-TCACGGATGGCAAATGTCATCCCGATTGCTTAAAAGCAAACA 226
Query 120 ATGAGCAAGAAGATTACGATGCATCTCAATCTGCAGCTTTGATAGCGGCGAGTCTGATTA 179
|||||||||||||||||||||||| |||||||||||||||| |||| | |||| ||||||
Sbjct 227 ATGAGCAAGAAGATTACGATGCATGTCAATCTGCAGCTTTGGTAGCTGTGAGTTTGATTA 286
Query 180 GCTCTGCACGGGTTATCTTCAAGCTCGACTCTGAGTATACTGAGTACTCAGCTCAGTATT 239
|||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 287 GCTCTGCACGTGTTATCTTCAAGATCGACTCTAAGTATACTGAGTACTCACCTCAGTATT 346
Query 240 TGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCAACAAAGCTGTCAGT 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 347 TGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCAACCAAGCTGTCAGT 406
Query 300 ACACTGTTGAAAACCTCCTTCGGTACTTGGTGGAGAACGTTTGGATCAAGAAGGAAGATG 359
||||||| | |||||||||| | ||||||||||| |||||||||| ||||||||||| |
Sbjct 407 ACACTGTCGGAAACCTCCTTAGTTACTTGGTGGAAAACGTTTGGACCAAGAAGGAAGTTA 466
Query 360 GGCAGGGAGAAATGGATCAACAACGCCGTGAGTTCACTGTGAAAGACTGCTTTGAATTTG 419
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 467 GGCAGAGAGAAATGGATCAACAACGCCGTGAGTTCACTGTCAAAGACTGCTTTGAATTTG 526
Query 420 CTTTTAAAAAAGGGCTTCCAAGAAGTGTG-CATTGGGCGCATGTGGGATGCACGTTCAAG 478
|||||||||||||||||||||||| || | |||||||||||||||||||| | ||| |
Sbjct 527 CTTTTAAAAAAGGGCTTCCAAGAAATG-GACATTGGGCGCATGTGGGATGTATATTCCCG 585
Query 479 GCTCCCCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCT 538
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GTTCCTCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCT 645
Query 539 ACAGATTTGGGTGAAGCATTGAAGCTGGGTATGCAACAACCAGTGGGAGCAAGGTTGCAT 598
|| || || ||||||| ||||||||||||||||||||||||| || ||||||| |||||
Sbjct 646 GCAAATGTGAGTGAAGCGTTGAAGCTGGGTATGCAACAACCAGCGGCAGCAAGGCTGCAT 705
Query 599 GTGTTCAGTCCAGAGTTTGATAGTGTTGGAGAGGGAATTTACGATGGGCCGTCAGGTAAT 658
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 706 TTGTTCAGTCCAGAGTTTGATCTTGTTGGAGAGGGTATTTACGATGGCCCGTCAGGTAAT 765
Query 659 GGAACAAGCTATGTTGGCCTTAGAGATGTGATCATGGTTGAAGCGGAGAGGATCAAGGGA 718
| |||| | |||||||| |||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 766 GAAACACGATATGTTGGACTTAGAGATGTGCTCATGGTTGAGGCGGAGAAGATCAAGGGA 825
Query 719 GAAACTGTTGTGACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 778
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GAAACTGTTTTTACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 885
Query 779 ACGAGAAGTATGATTCTCCCGCTTAACGGTGACGACGAGTCTCAGGTCAGAGAGCCAACA 838
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 886 ACGAGAAGTATGATTCTCCCGCTTAATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCA 945
Query 839 TGTCTGCTTGTTGACTTCTGTATCCCACGTTTCTCTATTAACTAAACAAGAGAGCTGAGA 898
||||| |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||
Sbjct 946 TGTCTACTTGTTGACTTCTGTATCCCACGTTTTTCTATCAACTAACCAAGTGAGCTGAGA 1005
Query 899 TCTTGGTAAGTATCTGGAGAACTTTATGGTAGTTGTGGAACCTGTTTGTTAGTCCTATAT 958
||||||||||||||||||||| |||||| ||||| || | ||| |||||||
Sbjct 1006 TCTTGGTAAGTATCTGGAGAAGTTTATGCTAGTT-TGT--C--GTT-------CCTATAT 1053
Query 959 TAAGAATGTTTTATCAGACTTAT-TTTC-TGTTTAAG---T-A--T--CTTGAAAACCTT 1008
||||||||||||||||||||||| ||| |||||||| | | | |||||||||| |
Sbjct 1054 TAAGAATGTTTTATCAGACTTATATTTTATGTTTAAGAAGTGAAGTATCTTGAAAACCGT 1113
Query 1009 ATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAATTAAGATT 1050
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAATTAAGATT 1155
> AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:5978678-5980376 FORWARD LENGTH=946
Length=946
Score = 643 bits (348), Expect = 0.0
Identities = 667/815 (82%), Gaps = 46/815 (6%)
Strand=Plus/Plus
Query 92 TGTCATCCAGATTGCGTGAAAGCAAGCAATGAGCAAGAAGATTACGATGCATCTCAATC- 150
|||||||||||||||| ||||||| ||||||| |||||||| ||||| |||||| |
Sbjct 155 TGTCATCCAGATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAA-CA 213
Query 151 TGCAGCTTTGATAGCGGCGAGTCTGATTAGCTCTGCACGGGTTATCTTCAAGCTCGACT- 209
||| ||| || |||||| || ||||||||||||||||||||||||| ||||||| || |
Sbjct 214 TGCCGCTATGGTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGA-TG 272
Query 210 CTGAGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGA-AGTT 268
||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 273 CTGTGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACC 332
Query 269 GAGGGAGAAATGGATCAACAAAGCTGTCAG-TACACTGTTGAAAACCTCCTTCGGTACT- 326
|||||||||||||||||||||||| |||| | |||| | ||||| | |||| ||| |
Sbjct 333 -AGGGAGAAATGGATCAACAAAGCTCTCAGCT-CACTCTCCAAAACTTGCTTCAGTA-TA 389
Query 327 TGG-TGGAGAACGTTTGGA-TCAAGAAGGAAGATGGGCAGGGAGAAATGGATCAACAACG 384
||| || | || || |||| | ||||||||||||| ||||||||||| ||| |||| ||
Sbjct 390 TGGATGAA-AATGTCTGGAAT-AAGAAGGAAGATGTGCAGGGAGAAAGGGAGCAACCAC- 446
Query 385 CCGTGAGTTCACTGTGAAAGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAAG 444
| |||||| ||||||||| |||||| |||||| || ||||||| || |||||
Sbjct 447 ---T-----CACTGTCAAAGACTGCCTTGAATGTGCTTTCAAGTAAGGGCTACCGAGAAG 498
Query 445 TGTGCATTGGGCGCATGTGGGATG-CACGTTCAAGGCTCCCCCATTTGCTTGTCAAATAC 503
|| ||| ||||| ||||||||||| | ||||||||||||| |||||||| ||||| || |
Sbjct 499 TGAGCAGTGGGCACATGTGGGATGTC-CGTTCAAGGCTCCACCATTTGCCTGTCAGATTC 557
Query 504 CTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTACAGA-TTTGGGTGAAGCATTGAAG 562
||||||| |||||||||||||||||||||||| ||| ||| ||||| |||||| || |||
Sbjct 558 CTCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTA-AGAGTTTGGATGAAGCGTTTAAG 616
Query 563 CTGG-GTATGCAACAACCAGTGGGAGCAAGGTTGCATGTGTTCAGTCCAGAGTTTGATAG 621
||| | || ||||||| ||||||||||| | ||||| |||||||||||| ||||||
Sbjct 617 CTGTTG-ATTAAACAACCGGTGGGAGCAAGACTCCATGTCTTCAGTCCAGAGCTTGATAA 675
Query 622 TGTTGGAGAGGGAATTTACGATGGGCC-GTC-AG---GTA-A-T--GGAA-CAAGCTATG 671
||||||||||||| ||||||| ||||| ||| || || | | |||| || ||||||
Sbjct 676 TGTTGGAGAGGGATTTTACGA-GGGCCTGTCTAGCCAGTCTAGTAAGGAATCACGCTATG 734
Query 672 TTGGCCTTAGAGATGTGATCATGGTTGAAGCGGAGAGGATCA-AGGGAGAAACTGTTG-T 729
|||| ||||| ||||| ||||| |||| || ||| | | || ||||| ||||||||| |
Sbjct 735 TTGGACTTAGGGATGTAATCATAGTTGCAGTGGATAAG-TCCGAGGGAAAAACTGTTGCT 793
Query 730 GACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCTAC-GAGAAGTA 788
|||||| |||| || |||||||||||||||||||||||||||||| || ||| |||
Sbjct 794 -ACTGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTG-CTTGTGAGCCGTA 851
Query 789 TGATTCTCCCGCTTAACGGTGACGACGAGTCTCAGGTCAGAGAGCCAACATGTCTGCTTG 848
|| || ||| |||| |||| || ||||||||||| | ||||||| || |||||||||
Sbjct 852 TGTTTGTCCAGCTTGGTGGTGGTGAGGAGTCTCAGGTGAAAGAGCCAGCAGGTCTGCTTG 911
Query 849 TTGACTTCTGTATCCCACGTTTCTCTATTAACTAA 883
||||||||||||||||||| || ||| | ||||||
Sbjct 912 TTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 946
> AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5972419-5974156 FORWARD LENGTH=1076
Length=1076
Score = 636 bits (344), Expect = 0.0
Identities = 687/844 (81%), Gaps = 57/844 (7%)
Strand=Plus/Plus
Query 226 CTCAGCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCA 285
|||||||||||||||||||||||| | |||||||||||| | |||||||||||||| |
Sbjct 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
Query 286 ACAAAGCTGTCAGTACACTGTTGAAAACCTCCTTCGGTACT-TGGTGGAGAACGTTTGG- 343
|| ||||| ||||| |||| | |||||| | | || ||| | ||||||| || || |||
Sbjct 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTA-TATGGTGGAAAATGTCTGGA 358
Query 344 ATCAAGAAGG-AAGATGGGCAGGGAGAAATGGATCAACAACGCCGTGAGTTCACTGTGAA 402
|| ||| ||| |||||| |||||||| | || | ||| || | ||||||| ||
Sbjct 359 AT-AAG-AGGTAAGATGTGCAGGGAG--A-GG--GAGCAA--CC---A-CTCACTGTCAA 405
Query 403 AGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAAGTGTGCATTGGGCGCATGT 462
||||||| |||||| |||||| || |||||||| || ||||| | |||||||| |||||
Sbjct 406 AGACTGCCTTGAATGTGCTTTCAAGAAAGGGCTACCGAGAAGAGAACATTGGGCACATGT 465
Query 463 GGGATGCACGTTCAAGGCTCCCCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGG 522
|||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 466 GGGATGTACATTCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGAAAGG 525
Query 523 AGAAGTGATTGAGGCTACAGA-TTTGGGTGAAGCATTGAAGCTGGGT-ATGCAACAACCA 580
||||||||||||| ||| ||| ||||| |||||| || ||||| | | || |||||||
Sbjct 526 AGAAGTGATTGAGACTA-AGAGTTTGGATGAAGCGTTTAAGCT-GTTGATTAAACAACCG 583
Query 581 GTGGGAGCAAGGTTGCATGTGTTCAGTCCAGAGTTTGATAGTGTTGGAGAGGGAATTTAC 640
||||| ||||| | ||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 584 GTGGGTGCAAGACTCCATGTGTTCAGTCCAGACCTTGATAATGTTGGAGAGGGAGTTTAC 643
Query 641 GATGGGCC-GTC-A----G----GTAATGGAA-CAAGCTATGTTGGCCTTAGAGATGTGA 689
|| ||||| ||| | | |||| |||| || |||||||||| ||||| ||||| |
Sbjct 644 GA-GGGCCTGTCTAGCCTGTCTCGTAA-GGAATCACGCTATGTTGGACTTAGGGATGTCA 701
Query 690 TCATGGTTGAAGCGGAGAGGAT-CAAGGGAGAAACTGTTG-TGACTGTGCAGATATGCTA 747
|||| |||| || | | | | | | ||||| ||||||||| | |||||| ||||||| ||
Sbjct 702 TCATAGTTGCAGTGAATAAG-TCCGAGGGAAAAACTGTTGCT-ACTGTGAAGATATGTTA 759
Query 748 CAAGAAGAAGACTTCATTTGTCAAAGTGTCTACGAGAAGTATGATTCTCCCGCTTAACGG 807
||||||||||||||||||||||||||||| | ||| ||||| || ||| |||| ||
Sbjct 760 CAAGAAGAAGACTTCATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTCCAGCTTGGTGG 819
Query 808 TGACGACGAGTCTCAGGTCAGAGAGCCAACATGTCTGCTTGTTGACTTCTGTATCCCACG 867
|| ||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 820 TGGCGAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACG 879
Query 868 TTTCTCTATTAACTAAACAAGAGAGCTGAGATCTTGGTAAGTATCTGGAGAACTTTATGG 927
|| ||||| ||||||||||||| |||||||||||| |||||||| || | |
Sbjct 880 CTTATCTATCAACTAAACAAGAG--CTGAGATCTTGGAAAGTATCTC-----CT--A-G- 928
Query 928 TAGTTGTGGAACCTGT-T-TGTTAGTC-CTATATTAAGAATGTTTTATCAGACTTATTTT 984
| | ||||||||| | | |||| ||| | || |||||||||||||||||||||||||||
Sbjct 929 T--T-GTGGAACCTCTCTATGTTGGTCTC-ATTTTAAGAATGTTTTATCAGACTTATTTT 984
Query 985 CTGTTTAA-GTATCTTGAAAACCTTATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAAT 1043
|||||| | |||| ||||||||| ||||||||||||| ||||| ||||||||||| || |
Sbjct 985 CTGTTTTATGTATTTTGAAAACCGTATGCTTGTTGTGAAACTCTGTTTGTGGTCTCAAGT 1044
Query 1044 TAAG 1047
||||
Sbjct 1045 TAAG 1048
> AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48180.1);
Has 37 Blast hits to 37 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749
FORWARD LENGTH=960
Length=960
Score = 63.9 bits (34), Expect = 3e-09
Identities = 93/119 (78%), Gaps = 14/119 (12%)
Strand=Plus/Plus
Query 135 ACGATGCATCT-CAATCTGCAGCT-TTGATAGCGG-CGAGTCTGATTAGCTCTGCACGGG 191
|||||| |||| | ||||| ||| | | |||||| ||| ||||| ||||||||||||
Sbjct 104 ACGATGAATCTGC-TTCTGCTGCTATCG-TAGCGGTTGAG-CTGATAAGCTCTGCACGGC 160
Query 192 TT--ATCTTCAAGCTCGACTCTGAGT--ATACTGAGTACTCAGCTCAGTATTTGGTGGA 246
|| | ||| ||||| || | | || |||||||||||||||||||||||||||||
Sbjct 161 TTGCA-CTT-AAGCTGGA-T-AGTGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGA 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5