BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491789
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assemb... 2527 0.0
AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | T... 1229 0.0
> AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly
factor group C5 | chr4:14558985-14562538 REVERSE LENGTH=1750
Length=1750
Score = 2527 bits (1368), Expect = 0.0
Identities = 1632/1754 (93%), Gaps = 40/1754 (2%)
Strand=Plus/Plus
Query 1 AAAGAAGAAAATGGAAAGCGAAGAAGCAGCAGCGACTGTTCAAGCTACCAGGCCGAGAAG 60
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 7 AAAGAAGGAAATGGAAAGC---GAAGCAGCAGCGACTGTTCAAGCCACCAGGCCGAGAAG 63
Query 61 AGTATCTAGGACTCCGGTGACGGCCATTTTGACGAAGAAGAGAGGTCGGAAACCTGAGAG 120
|| | |||||||||||||||| |||||||||||| | |||||| | ||||||||| ||||
Sbjct 64 AGCACCTAGGACTCCGGTGACAGCCATTTTGACGGATAAGAGAAGACGGAAACCTAAGAG 123
Query 121 AAACGACGAGTCTCA-TTCACCTA-TTTCCCAACAGCAGAGTCAAAAGGCCACTGTTGAC 178
||| |||||||||| || ||| | ||| | ||||||||||||||||||||| ||||||
Sbjct 124 CAACAACGAGTCTCAGTT-ACC-ATTTTTGCTACAGCAGAGTCAAAAGGCCACCGTTGAC 181
Query 179 GACAAGTACTCACAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAACCAT 238
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 182 GACACTTACTCTCAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAATCAT 241
Query 239 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGCTTCT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 242 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGGTTCT 301
Query 299 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 361
Query 359 ATAGCCAATTGCGAATCTGTTAATAGGCAGCTTAATGAAGAGGCACACTCTCCAACTGTG 418
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 362 ATAGCCAATTGCGAAACTGTTAATAGGCAGCTTAATGAAAAGGCACACTCTCCATTTGTG 421
Query 419 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATCAGGGAACTCCCACAA 478
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 422 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATTAGGGAACTCCCTCAA 481
Query 479 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGACACTGAG 538
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 482 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATATTCTCATTTGGAACACTGAG 541
Query 539 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCACATTCTCGTCCAGATTTGTTACTA 598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCAGATTCTCGTCCAGATTTGTTACTA 601
Query 599 ACTGGGCACCAGGATAATGCTGAATTTGCTCTTGCCATGTGCCCAACCGAACCTTTTGTT 658
| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 602 ATTGGGCACCAGGATGATGCTGAATTTGCTCTTGCAATGTGCCCAACCGAACCTTTTGTT 661
Query 659 CTCTCTGGAGGGAAGGACAAGTCCGTTGTTTTGTGGAGTATCCAAGACCATATCACAATG 718
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 662 CTCTCTGGAGGCAAGGACAAGTCCGTTATTTTGTGGAATATCCAAGACCATATCACAATG 721
Query 719 GCTGGTACGGATTCCAAATCCCCTGGATCAAGCTTCAAGCAGACTGGTGAAGGTAGTAAT 778
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 722 GCTGGTTCGGATTCCAAATCCCCTGGATCCAGCTTCAAGCAGACTGGTGAAGGTAGTGAT 781
Query 779 AAAACTGGTTGTCCTTCTGTTGGCCCTCGAGGCGTATATCATGGCCACGAAGATACAGTT 838
||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| |||
Sbjct 782 AAAACTGGTGGTCCTTCTGTTGGCCCTCGAGGCATATATAATGGCCACAAAGATACTGTT 841
Query 839 GAAGATGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCT 898
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 842 GAAGACGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGACGATTCT 901
Query 899 TGCCTAATGCTATGGGATGCAAGAACTGGCACTGGTCCTGCCATAAAGGTTGAGAAGGCA 958
||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 902 TGCCTTATGCTATGGGACGCAAGAACTGGCACTAGTCCTGCCATGAAGGTTGAGAAGGCA 961
Query 959 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAACAATCTGATCCTGACC 1018
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 962 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAATAATCTGATCCTGACT 1021
Query 1019 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTGACCTCAAATGGAGTT 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1022 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTTACCTCAAATGGAGTT 1081
Query 1079 GGTTCACCTATTTACAAATTTGAAGGCCACAAG-GCTGCTGTTCTTTGTGTTCAGTGGTC 1137
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1082 GGTTCACCTGTTTACAAATTTGAAGGCCAC-AGAGCTGCTGTTCTTTGTGTTCAGTGGTC 1140
Query 1138 TCCTGATAAATCATCTGTGTTTGGGAGTTCAGCAGAAGATGGTCTCTTGAACATATGGGA 1197
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 TCCTGATAAATCATCTGTTTTTGGGAGTTCTGCAGAAGATGGTCTCTTGAACATATGGGA 1200
Query 1198 CTATGATACGGTTGGCAAGAAGTCTGAGCGTGCACCCAAAACTCCTGCTGGGCTTTTCTT 1257
| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1201 TTGTGATAGGGTTGGCAAGAAGTCTGAGCGTGCAACCAAAACTCCTGATGGGCTTTTCTT 1260
Query 1258 CCAGCATGCTGGTCACAGGGACAAATTGGTCGACTTCCACTGGAGCCCAATGGACCCTTG 1317
||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||
Sbjct 1261 CCAGCATGCTGGTCACAGGGACAAAGTGGTCGACTTCCACTGGAGCCTATTGAACCCTTG 1320
Query 1318 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTAGCGGTGGAGGTGGTACGTTGCAGAT 1377
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1321 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTATCGGTGGAGGTGGTACATTGCAGAT 1380
Query 1378 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1440
Query 1438 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGCCTTGAGGAAGCAACCCCATCATGTC 1497
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1441 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGTCTTGAGGAAGCAATCCCATCATGTC 1500
Query 1498 TATTAGTA---GT--GT--C--------AGT-T---TTT--GCGAG-ATAAATCGGTATA 1535
|||||||| || || | ||| | ||| ||||| | ||||| || ||
Sbjct 1501 TATTAGTATTAGTAAGTTGCTGGGGTTTAGTGTCAGTTTTTGCGAGGA-AAATCAGTTTA 1559
Query 1536 CTTATGCGATTTAGGTGTTATTTTAGCGGGAAAATTACTTGGTTTGTGTCAG-CCAGTAA 1594
|||||||||||||||||||||||| |||| || |||||||||||| ||| || |||||||
Sbjct 1560 CTTATGCGATTTAGGTGTTATTTTTGCGG-AATATTACTTGGTTTATGT-AGGCCAGTAA 1617
Query 1595 TTCAACATATTGGTAGGTTTAGGACGTCCGGAATCTTATATGGTTCTTGATCCTGTTTCT 1654
|||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 1618 TTCAACATATTGGTAGATTTAGGACTTCCGGAATCTTGTATGGTACTTGATCCTGTTTCT 1677
Query 1655 TCAGGTTAATCGTAGGCACCTAACTTGCTTGTAGTTTCAAACATTGTT----GTGAATCC 1710
||||||||||| ||||||||||||||||||||| |||||| | || || ||||||||
Sbjct 1678 TCAGGTTAATCCTAGGCACCTAACTTGCTTGTATTTTCAA-CTTTTTTTTTTGTGAATCC 1736
Query 1711 AAACTTGGTTAAGC 1724
||||||||||||||
Sbjct 1737 AAACTTGGTTAAGC 1750
> AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 |
Transducin family protein / WD-40 repeat family protein | chr2:8455936-8459525
FORWARD LENGTH=1884
Length=1884
Score = 1229 bits (665), Expect = 0.0
Identities = 975/1123 (87%), Gaps = 27/1123 (2%)
Strand=Plus/Plus
Query 392 AATGAAGAGGCACACTCTCCAACTGTGAAGAAGTACAAGACCATCATCCACCCTGGAGAG 451
|||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 509 AATGAAGAAGCACGTTCTCCATTTGTGAAGAAGTACAAGACCATCATTCACCCTGGAGAG 568
Query 452 GTCAACAGAATCAGGGAACTCCCACAAAATAGCAAGATTGTAGCTACTCACACCGACAGT 511
|| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 569 GTTAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTTGCTACTCACACCGACAGT 628
Query 512 CCTGATGTTCTCATTTGGGACACTGAGACTCAACCAGACCGGT-ATGCTGTGCTTGGAGC 570
|||||||||||||||||||| ||| || |||||| ||| || ||||||||||||||||
Sbjct 629 CCTGATGTTCTCATTTGGGATGTTGAAACCCAACCAAACC-GTCATGCTGTGCTTGGAGC 687
Query 571 TCCACATTCTCGTCCAGATTTGTTACTAACTGGGCACCAGGATAATGCTGAATTTGCTCT 630
| || |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 688 TGCAAATTCCCGTCCAGATTTGATACTAACTGGGCACCAAGATAATGCTGAATTTGCTCT 747
Query 631 TGCCATGTGCCCAACCGAACCTTTTGTTCTCTCTGGAGGGAAGGACAAGTCCGTTGTTTT 690
||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 748 TGCCATGTGCCCAACGGAACCCTTTGTGCTCTCCGGAGGCAAGGACAAGTCAGTTGTTTT 807
Query 691 GTGGAGTATCCAAGACCATATCACAATGGCTGGTACGGATTCCAAATCCCCTGGATCAAG 750
||||||||||||||| || ||||||| | ||| || ||||||||||| ||||||| |
Sbjct 808 GTGGAGTATCCAAGATCACATCACAACGATTGGGACAGATTCCAAATCATCTGGATCTAT 867
Query 751 CTTCAAGCAGACTGGTGAAGGTAGTAATAA-AACTG-GTTGTCCTTCTGTTGGCCCTCGA 808
| |||| |||||||||||||||| | |||| || || | ||||| |||||||||| |||
Sbjct 868 CATCAAACAGACTGGTGAAGGTACTGATAAGAA-TGAG-AGTCCTACTGTTGGCCCACGA 925
Query 809 GGCGTATATCATGGCCACGAAGATACAGTTGAAGATGTGGCATTCTGTCC-ATCTAGTGC 867
|| |||||||||||||| ||||||||||||||||||||||||||| | || | | |||||
Sbjct 926 GGTGTATATCATGGCCATGAAGATACAGTTGAAGATGTGGCATTCAGCCCGA-CGAGTGC 984
Query 868 ACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTAATGCTATGGGATGCAAGAACTGG 927
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 985 ACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTTATACTATGGGATGCGAGAACTGG 1044
Query 928 CACTGGTCCTGCCATAAAGGTTGAGAAGGCACATGATGCTGATCTTCACTGTGTCGATTG 987
||| |||| || |||||||| || || ||||||||||||||||| ||||| |||||
Sbjct 1045 CACAAACCCTGTCACGAAGGTTGAAAAAGCGCATGATGCTGATCTTCATTGTGTTGATTG 1104
Query 988 GAATCCTCATGACAACAATCTGATCCTGACCGGGTCAGCAGATAACACTGTCCGTGT-GT 1046
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 1105 GAATCCTCATGACGACAATCTGATCCTGACAGGGTCAGCAGACAACACTGTCCG-GTTGT 1163
Query 1047 TTGACCGCCGAAACCTGACCTCAAATGGAGTTGGTTCACCTATTTACAAATTTGAAGGCC 1106
|||| || | || || ||| | |||||||||||||| ||||||||||||||||| || |
Sbjct 1164 TTGATCGTAGGAAGCTTACCGCTAATGGAGTTGGTTCGCCTATTTACAAATTTGAGGGAC 1223
Query 1107 ACAAGGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAATCATCTGTGTTTGGGAGTT 1166
|||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 1224 ACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAGTCATCCGTCTTTGGGAGCT 1283
Query 1167 CAGCAGAAGATGGTCTCTTGAACATATGGGACTATGATACGGTTGGCAAGAAGTCTGAGC 1226
| ||||||||||||||||||||||| ||||| ||||| | ||| | ||||||||||| |
Sbjct 1284 CTGCAGAAGATGGTCTCTTGAACATCTGGGATTATGACAGGGTCAGTAAGAAGTCTGATC 1343
Query 1227 GTGCACCCAAAA-CTCCTGCTGGGCTTTTCTTCCAGCATGCTGGTCACAGGGACAAA-TT 1284
||||| | |||| | || |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1344 GTGCAGCTAAAAGCCCC-GCTGGGCTCTTCTTCCAGCATGCTGGTCACAGGGACAAAGTT 1402
Query 1285 GGTCGACTTCCACTGGA--GCC-CAATGGACCCTTGGACTATTGTCAGTGTTTCTGATAA 1341
| | || |||||||||| || || | ||||||||||||||||||||||||||||| |
Sbjct 1403 GTT-GATTTCCACTGGAATGCTTCA--G-ACCCTTGGACTATTGTCAGTGTTTCTGATGA 1458
Query 1342 TTGTGAGAGTAGC-GGTGGAGGTGGTACGTTGCAGATATGGCGGATGAGTGACTTGATTT 1400
||||||| || | ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1459 CTGTGAGACTA-CTGGTGGAGGTGGAACATTGCAGATATGGCGGATGAGTGACTTGATTT 1517
Query 1401 ACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAAATTCAAGTCACATGTTTTCACAT 1460
||||||| ||||| |||||| || |||| | ||||| |||||||| |||||| | || |
Sbjct 1518 ACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGTTCAAGTCGCATGTTATGACTT 1577
Query 1461 GTACCTCCAAGCCTTGAG-G-AA-GCAACCCCATCATGTCTAT 1500
|| |||||||||||| || | || | || ||||| |||||||
Sbjct 1578 GTGCCTCCAAGCCTTAAGAGTAAAGAAAACCCAT--TGTCTAT 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5