BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491789 Length=1724 Score E Sequences producing significant alignments: (Bits) Value AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assemb... 2527 0.0 AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | T... 1229 0.0 > AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly factor group C5 | chr4:14558985-14562538 REVERSE LENGTH=1750 Length=1750 Score = 2527 bits (1368), Expect = 0.0 Identities = 1632/1754 (93%), Gaps = 40/1754 (2%) Strand=Plus/Plus Query 1 AAAGAAGAAAATGGAAAGCGAAGAAGCAGCAGCGACTGTTCAAGCTACCAGGCCGAGAAG 60 ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 7 AAAGAAGGAAATGGAAAGC---GAAGCAGCAGCGACTGTTCAAGCCACCAGGCCGAGAAG 63 Query 61 AGTATCTAGGACTCCGGTGACGGCCATTTTGACGAAGAAGAGAGGTCGGAAACCTGAGAG 120 || | |||||||||||||||| |||||||||||| | |||||| | ||||||||| |||| Sbjct 64 AGCACCTAGGACTCCGGTGACAGCCATTTTGACGGATAAGAGAAGACGGAAACCTAAGAG 123 Query 121 AAACGACGAGTCTCA-TTCACCTA-TTTCCCAACAGCAGAGTCAAAAGGCCACTGTTGAC 178 ||| |||||||||| || ||| | ||| | ||||||||||||||||||||| |||||| Sbjct 124 CAACAACGAGTCTCAGTT-ACC-ATTTTTGCTACAGCAGAGTCAAAAGGCCACCGTTGAC 181 Query 179 GACAAGTACTCACAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAACCAT 238 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 182 GACACTTACTCTCAGTGGAAGACTCTTCTTCCCATTCTCTATGATTCGTTTGTTAATCAT 241 Query 239 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGCTTCT 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 242 ACCCTCGTCTGGCCCTCTCTCTCTTGCAGATGGGGGCCACAGCTTGAGCAAGCAGGTTCT 301 Query 299 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 AAGACTCAACGTCTCTATCTCTCGGAACAAACGAATGGCAGTGTGCCTAATACTTTGGTC 361 Query 359 ATAGCCAATTGCGAATCTGTTAATAGGCAGCTTAATGAAGAGGCACACTCTCCAACTGTG 418 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| Sbjct 362 ATAGCCAATTGCGAAACTGTTAATAGGCAGCTTAATGAAAAGGCACACTCTCCATTTGTG 421 Query 419 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATCAGGGAACTCCCACAA 478 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 422 AAGAAGTACAAGACCATCATCCACCCTGGAGAGGTCAACAGAATTAGGGAACTCCCTCAA 481 Query 479 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGACACTGAG 538 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 482 AATAGCAAGATTGTAGCTACTCACACCGACAGTCCTGATATTCTCATTTGGAACACTGAG 541 Query 539 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCACATTCTCGTCCAGATTTGTTACTA 598 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 542 ACTCAACCAGACCGGTATGCTGTGCTTGGAGCTCCAGATTCTCGTCCAGATTTGTTACTA 601 Query 599 ACTGGGCACCAGGATAATGCTGAATTTGCTCTTGCCATGTGCCCAACCGAACCTTTTGTT 658 | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 602 ATTGGGCACCAGGATGATGCTGAATTTGCTCTTGCAATGTGCCCAACCGAACCTTTTGTT 661 Query 659 CTCTCTGGAGGGAAGGACAAGTCCGTTGTTTTGTGGAGTATCCAAGACCATATCACAATG 718 ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 662 CTCTCTGGAGGCAAGGACAAGTCCGTTATTTTGTGGAATATCCAAGACCATATCACAATG 721 Query 719 GCTGGTACGGATTCCAAATCCCCTGGATCAAGCTTCAAGCAGACTGGTGAAGGTAGTAAT 778 |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 722 GCTGGTTCGGATTCCAAATCCCCTGGATCCAGCTTCAAGCAGACTGGTGAAGGTAGTGAT 781 Query 779 AAAACTGGTTGTCCTTCTGTTGGCCCTCGAGGCGTATATCATGGCCACGAAGATACAGTT 838 ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| ||| Sbjct 782 AAAACTGGTGGTCCTTCTGTTGGCCCTCGAGGCATATATAATGGCCACAAAGATACTGTT 841 Query 839 GAAGATGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCT 898 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 842 GAAGACGTGGCATTCTGTCCATCTAGTGCACAAGAATTCTGCAGTGTTGGTGACGATTCT 901 Query 899 TGCCTAATGCTATGGGATGCAAGAACTGGCACTGGTCCTGCCATAAAGGTTGAGAAGGCA 958 ||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| Sbjct 902 TGCCTTATGCTATGGGACGCAAGAACTGGCACTAGTCCTGCCATGAAGGTTGAGAAGGCA 961 Query 959 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAACAATCTGATCCTGACC 1018 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 962 CATGATGCTGATCTTCACTGTGTCGATTGGAATCCTCATGACAATAATCTGATCCTGACT 1021 Query 1019 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTGACCTCAAATGGAGTT 1078 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1022 GGGTCAGCAGATAACACTGTCCGTGTGTTTGACCGCCGAAACCTTACCTCAAATGGAGTT 1081 Query 1079 GGTTCACCTATTTACAAATTTGAAGGCCACAAG-GCTGCTGTTCTTTGTGTTCAGTGGTC 1137 ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1082 GGTTCACCTGTTTACAAATTTGAAGGCCAC-AGAGCTGCTGTTCTTTGTGTTCAGTGGTC 1140 Query 1138 TCCTGATAAATCATCTGTGTTTGGGAGTTCAGCAGAAGATGGTCTCTTGAACATATGGGA 1197 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1141 TCCTGATAAATCATCTGTTTTTGGGAGTTCTGCAGAAGATGGTCTCTTGAACATATGGGA 1200 Query 1198 CTATGATACGGTTGGCAAGAAGTCTGAGCGTGCACCCAAAACTCCTGCTGGGCTTTTCTT 1257 | ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1201 TTGTGATAGGGTTGGCAAGAAGTCTGAGCGTGCAACCAAAACTCCTGATGGGCTTTTCTT 1260 Query 1258 CCAGCATGCTGGTCACAGGGACAAATTGGTCGACTTCCACTGGAGCCCAATGGACCCTTG 1317 ||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||| Sbjct 1261 CCAGCATGCTGGTCACAGGGACAAAGTGGTCGACTTCCACTGGAGCCTATTGAACCCTTG 1320 Query 1318 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTAGCGGTGGAGGTGGTACGTTGCAGAT 1377 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1321 GACTATTGTCAGTGTTTCTGATAATTGTGAGAGTATCGGTGGAGGTGGTACATTGCAGAT 1380 Query 1378 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 ATGGCGGATGAGTGACTTGATTTACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAA 1440 Query 1438 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGCCTTGAGGAAGCAACCCCATCATGTC 1497 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1441 ATTCAAGTCACATGTTTTCACATGTACCTCCAAGTCTTGAGGAAGCAATCCCATCATGTC 1500 Query 1498 TATTAGTA---GT--GT--C--------AGT-T---TTT--GCGAG-ATAAATCGGTATA 1535 |||||||| || || | ||| | ||| ||||| | ||||| || || Sbjct 1501 TATTAGTATTAGTAAGTTGCTGGGGTTTAGTGTCAGTTTTTGCGAGGA-AAATCAGTTTA 1559 Query 1536 CTTATGCGATTTAGGTGTTATTTTAGCGGGAAAATTACTTGGTTTGTGTCAG-CCAGTAA 1594 |||||||||||||||||||||||| |||| || |||||||||||| ||| || ||||||| Sbjct 1560 CTTATGCGATTTAGGTGTTATTTTTGCGG-AATATTACTTGGTTTATGT-AGGCCAGTAA 1617 Query 1595 TTCAACATATTGGTAGGTTTAGGACGTCCGGAATCTTATATGGTTCTTGATCCTGTTTCT 1654 |||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 1618 TTCAACATATTGGTAGATTTAGGACTTCCGGAATCTTGTATGGTACTTGATCCTGTTTCT 1677 Query 1655 TCAGGTTAATCGTAGGCACCTAACTTGCTTGTAGTTTCAAACATTGTT----GTGAATCC 1710 ||||||||||| ||||||||||||||||||||| |||||| | || || |||||||| Sbjct 1678 TCAGGTTAATCCTAGGCACCTAACTTGCTTGTATTTTCAA-CTTTTTTTTTTGTGAATCC 1736 Query 1711 AAACTTGGTTAAGC 1724 |||||||||||||| Sbjct 1737 AAACTTGGTTAAGC 1750 > AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8455936-8459525 FORWARD LENGTH=1884 Length=1884 Score = 1229 bits (665), Expect = 0.0 Identities = 975/1123 (87%), Gaps = 27/1123 (2%) Strand=Plus/Plus Query 392 AATGAAGAGGCACACTCTCCAACTGTGAAGAAGTACAAGACCATCATCCACCCTGGAGAG 451 |||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||| Sbjct 509 AATGAAGAAGCACGTTCTCCATTTGTGAAGAAGTACAAGACCATCATTCACCCTGGAGAG 568 Query 452 GTCAACAGAATCAGGGAACTCCCACAAAATAGCAAGATTGTAGCTACTCACACCGACAGT 511 || ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 569 GTTAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTTGCTACTCACACCGACAGT 628 Query 512 CCTGATGTTCTCATTTGGGACACTGAGACTCAACCAGACCGGT-ATGCTGTGCTTGGAGC 570 |||||||||||||||||||| ||| || |||||| ||| || |||||||||||||||| Sbjct 629 CCTGATGTTCTCATTTGGGATGTTGAAACCCAACCAAACC-GTCATGCTGTGCTTGGAGC 687 Query 571 TCCACATTCTCGTCCAGATTTGTTACTAACTGGGCACCAGGATAATGCTGAATTTGCTCT 630 | || |||| |||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 688 TGCAAATTCCCGTCCAGATTTGATACTAACTGGGCACCAAGATAATGCTGAATTTGCTCT 747 Query 631 TGCCATGTGCCCAACCGAACCTTTTGTTCTCTCTGGAGGGAAGGACAAGTCCGTTGTTTT 690 ||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 748 TGCCATGTGCCCAACGGAACCCTTTGTGCTCTCCGGAGGCAAGGACAAGTCAGTTGTTTT 807 Query 691 GTGGAGTATCCAAGACCATATCACAATGGCTGGTACGGATTCCAAATCCCCTGGATCAAG 750 ||||||||||||||| || ||||||| | ||| || ||||||||||| ||||||| | Sbjct 808 GTGGAGTATCCAAGATCACATCACAACGATTGGGACAGATTCCAAATCATCTGGATCTAT 867 Query 751 CTTCAAGCAGACTGGTGAAGGTAGTAATAA-AACTG-GTTGTCCTTCTGTTGGCCCTCGA 808 | |||| |||||||||||||||| | |||| || || | ||||| |||||||||| ||| Sbjct 868 CATCAAACAGACTGGTGAAGGTACTGATAAGAA-TGAG-AGTCCTACTGTTGGCCCACGA 925 Query 809 GGCGTATATCATGGCCACGAAGATACAGTTGAAGATGTGGCATTCTGTCC-ATCTAGTGC 867 || |||||||||||||| ||||||||||||||||||||||||||| | || | | ||||| Sbjct 926 GGTGTATATCATGGCCATGAAGATACAGTTGAAGATGTGGCATTCAGCCCGA-CGAGTGC 984 Query 868 ACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTAATGCTATGGGATGCAAGAACTGG 927 |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 985 ACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTTATACTATGGGATGCGAGAACTGG 1044 Query 928 CACTGGTCCTGCCATAAAGGTTGAGAAGGCACATGATGCTGATCTTCACTGTGTCGATTG 987 ||| |||| || |||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 1045 CACAAACCCTGTCACGAAGGTTGAAAAAGCGCATGATGCTGATCTTCATTGTGTTGATTG 1104 Query 988 GAATCCTCATGACAACAATCTGATCCTGACCGGGTCAGCAGATAACACTGTCCGTGT-GT 1046 ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| || || Sbjct 1105 GAATCCTCATGACGACAATCTGATCCTGACAGGGTCAGCAGACAACACTGTCCG-GTTGT 1163 Query 1047 TTGACCGCCGAAACCTGACCTCAAATGGAGTTGGTTCACCTATTTACAAATTTGAAGGCC 1106 |||| || | || || ||| | |||||||||||||| ||||||||||||||||| || | Sbjct 1164 TTGATCGTAGGAAGCTTACCGCTAATGGAGTTGGTTCGCCTATTTACAAATTTGAGGGAC 1223 Query 1107 ACAAGGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAATCATCTGTGTTTGGGAGTT 1166 |||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| | Sbjct 1224 ACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAGTCATCCGTCTTTGGGAGCT 1283 Query 1167 CAGCAGAAGATGGTCTCTTGAACATATGGGACTATGATACGGTTGGCAAGAAGTCTGAGC 1226 | ||||||||||||||||||||||| ||||| ||||| | ||| | ||||||||||| | Sbjct 1284 CTGCAGAAGATGGTCTCTTGAACATCTGGGATTATGACAGGGTCAGTAAGAAGTCTGATC 1343 Query 1227 GTGCACCCAAAA-CTCCTGCTGGGCTTTTCTTCCAGCATGCTGGTCACAGGGACAAA-TT 1284 ||||| | |||| | || |||||||| |||||||||||||||||||||||||||||| || Sbjct 1344 GTGCAGCTAAAAGCCCC-GCTGGGCTCTTCTTCCAGCATGCTGGTCACAGGGACAAAGTT 1402 Query 1285 GGTCGACTTCCACTGGA--GCC-CAATGGACCCTTGGACTATTGTCAGTGTTTCTGATAA 1341 | | || |||||||||| || || | ||||||||||||||||||||||||||||| | Sbjct 1403 GTT-GATTTCCACTGGAATGCTTCA--G-ACCCTTGGACTATTGTCAGTGTTTCTGATGA 1458 Query 1342 TTGTGAGAGTAGC-GGTGGAGGTGGTACGTTGCAGATATGGCGGATGAGTGACTTGATTT 1400 ||||||| || | ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1459 CTGTGAGACTA-CTGGTGGAGGTGGAACATTGCAGATATGGCGGATGAGTGACTTGATTT 1517 Query 1401 ACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAAATTCAAGTCACATGTTTTCACAT 1460 ||||||| ||||| |||||| || |||| | ||||| |||||||| |||||| | || | Sbjct 1518 ACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGTTCAAGTCGCATGTTATGACTT 1577 Query 1461 GTACCTCCAAGCCTTGAG-G-AA-GCAACCCCATCATGTCTAT 1500 || |||||||||||| || | || | || ||||| ||||||| Sbjct 1578 GTGCCTCCAAGCCTTAAGAGTAAAGAAAACCCAT--TGTCTAT 1618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85240525410 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5