BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491790
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29720.1 | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr... 2695 0.0
> AT4G29720.1 | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4:14553315-14555167
REVERSE LENGTH=1853
Length=1853
Score = 2695 bits (1459), Expect = 0.0
Identities = 1721/1840 (94%), Gaps = 48/1840 (3%)
Strand=Plus/Plus
Query 1 ATTCACCTTCCTCCGTCTCCTTCCCCTAATCCCCAAAA-ACACAGATAAAAATCTCTCC- 58
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATTCACCTTCCTCCGTCCCCTTCCCCTAATCCCCAAAACACACAGATAAAAATCTCTCCT 60
Query 59 TTTTTCAT-----C--AT------ACACCGACAAGGATCTTCCTTTTAACTATGGCGAAG 105
|||||||| | || ||||||||||||| |||| ||||||||||||||||
Sbjct 61 TTTTTCATCGAAGCATATAACACAACACCGACAAGGAGATTCC-TTTAACTATGGCGAAG 119
Query 106 AAAGCAAGAATTGTTATAATCGGAGCTGGAATGGCTGGTCTCACGGCGGCTAACAAGCTC 165
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 AAAGCAAGAATTGTTATAATCGGAGCTGGAATGGCTGGTCTCACGGCGGCGAACAAGCTC 179
Query 166 TACACAAGCTCCAACAACATGTTCGAGCTCTCCGTCGTCGAAGGCGGTTCTAGAATCGGC 225
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 180 TACACAAGCTCCAACAACACCTTCGAGCTCTCAGTCGTCGAAGGCGGTTCTAGAATCGGC 239
Query 226 GGGAGGATCAACACCTCTGAGTTCTCCTCCGAGAAGATTGAGATGGGTGCCACGTGGATC 285
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 240 GGTAGGATCAATACCTCTGAGTTCTCATCAGAGAAGATTGAGATGGGTGCCACGTGGATC 299
Query 286 CACGGAATCGGTGGAAGCCCTGTTTATAGAATCGCCAAAGAGACTGGTTCTTTAGTCTCC 345
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CACGGAATCGGTGGAAGCCCTGTTTATAGAATCGCTAAAGAGACTGGTTCTTTAGTCTCT 359
Query 346 GACGAGCCATGGGAGTGTATGGATTCCACCATTGATAAAGCTAAGACCTTTGCTGAAGGT 405
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATGAGCCATGGGAGTGTATGGATTCCACCATTGATAAAGCTAAGACCTTTGCTGAAGGT 419
Query 406 GGGTTCGAGATTGAGCCTTCGATTGTTGAATCCATCTCTGGATTGTTCAATGCTCTCATG 465
|||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 420 GGGTTCGAGATTGAGCCTTCCATTGTTGAATCCATCTCTGGTTTGTTCACTGCTCTCATG 479
Query 466 GAGTTAGCTCAGGGGAAAGAGATCTCTCAACCCGACGCCGATTTG-GCTCGTTTGTCTCA 524
|| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||
Sbjct 480 GAATTAGCTCAGGGGAAAGAGATCTCTCAATCCGACGCCGATTTGAG-TCGTTTGGCTCA 538
Query 525 TATTTACGAAACTGCCACTAGGGTTTGCTCTACTGGAAGTAGTA---GTGTTGGGTCGTT 581
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 539 TATTTACGAAACTGCCACTAGGGTTTGCTCTAAGGGAAGTAGTACTAGTGTTGGGTCGTT 598
Query 582 TCTGAAATCTGGGTTTGACGCGTATTGGGATTCAATCAGCAATGGAGGAGATGATGGAGT 641
| |||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 599 TTTGAAATCTGGGTTTGATGCTTATTGGGATTCAATCAGCAATGGAGGAGAAGAAGGAGT 658
Query 642 TAAAGGGTATGGGAAATGGAGTAGAAAGTCACTTGAAGAAGCCATTTTTACGATGTTTAG 701
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 TAAAGGGTATGGGAAATGGAGTAGGAAGTCACTTGAAGAAGCCATTTTTACGATGTTTAG 718
Query 702 TAACACACAGAGGACTTACACATCTGCTGATGATCTCTCGACGCTTGATTTCACGGCGGA 761
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 719 TAACACACAGAGGACTTACACATCTGCTGATGAACTCTCGACGCTTGATTTCGCGGCGGA 778
Query 762 GAGTGAGTATCAGATGTTTCCAGGAGAAGAAATCACTATAGCTAAAGGCTATCTCAGTGT 821
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 779 GAGTGAGTATCAGATGTTTCCAGGAGAAGAAATCACTATAGCTAAAGGCTATCTTAGTGT 838
Query 822 TATTCATCATTTAGCATCTGTTCTTCCTCAAGGTGTTATCCAGTTGAATCGAAAGGTCAC 881
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 839 TATTCATCATTTGGCATCTGTGCTTCCTCAAGGTGTTATCCAATTGAATCGAAAGGTCAC 898
Query 882 GAAGATCGAGTGGCAGAGTAACGAAGTGAAGCTGCATTTCTCAGATGGGTCTGCTGTTTT 941
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 899 GAAGATCGAGTGGCAGAGTAATGAAGTGAAGCTGCATTTCTCAGATGGGTCTGTTGTTTT 958
Query 942 TGCAGATCATGTTATTGTTACTGTCTCTTTAGGTGTGCTTAAAGCAGGGATTGAGAGTGA 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 959 TGCAGATCATGTTATTGTTACTGTCTCTTTAGGTGTGCTTAAAGCAGGGATTGAGACTGA 1018
Query 1002 TGGAGAATTGTTTAGTCCTCCTTTGCCTGATTTCAAGTCAGACGCTATTAAGAGG-CTAG 1060
|| |||||||||||||||||||||||||||||||| ||||||||||||| || | ||||
Sbjct 1019 TGCTGAATTGTTTAGTCCTCCTTTGCCTGATTTCAAATCAGACGCTATTA-GAAGACTAG 1077
Query 1061 GTTATGGAGTTGTCAACAAGCTGTTCGTTGAGATGTCTCAGAGAAAGTTTCCGTCTCTGC 1120
| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||| |||
Sbjct 1078 GCTATGGAGTTGTCAACAAGCTGTTCGTCGAGATGTCTCAAAGAAAGTTCCCCTCTTTGC 1137
Query 1121 AACTTGTGTTTGACCGGGAGGATTCTGAGTTTAGGTTTGTGAAAATCCCGTGGTGGATGA 1180
| ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 1138 AGCTTGTGTTTGACCGGGAGGATTCCGAGTTTAGGTTCGTGAAAATTCCATGGTGGATGA 1197
Query 1181 GAAGAACGGCGACCATTACCCCAATCCATAGCAATTCGAAGGTCTTGCTTTCTTGGTTTG 1240
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1198 GAAGAACCGCGACCATTACCCCAATCCATAGCAATTCAAAGGTCTTGCTTTCTTGGTTTG 1257
Query 1241 CAGGCAAAGAAGCTATCGAGCTTGAGAAACTAACCGATGAGGAGATCATAGACGGTGTCA 1300
|||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 1258 CAGGCAAAGAAGCTCTCGAGCTTGAGAAACTTACCGATGAGGAGATCAAAGACGCTGTCA 1317
Query 1301 TGACCACTATCTCTTGCTTGACAGGCAAGGAAGTTAAGAGA-GATACCGCAAAGACTTCT 1359
||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct 1318 TGACCACTATCTCTTGCTTGACAGGCAAGGAAGTTAAGA-ATGATACCGCAAAG-C--C- 1372
Query 1360 AGGCCTTTGACCAATGGCTCTTTCAATGATGATGATGATGAAGTAATGAAGATCACAAAG 1419
| || |||||||||||| || |||||||||||||| | | |||||||| ||||||
Sbjct 1373 ---C-TT-GACCAATGGCTCATTGAATGATGATGATGA--A-GCCATGAAGATTACAAAG 1424
Query 1420 GTCTTGAAGAGCAAATGGGGAAGTGATCCTCTGTTTC-GTGGCTCCTATTCGTATGTGGC 1478
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 1425 GTCTTGAAGAGCAAATGGGGAAGTGATCCTCTGTT-CAGAGGCTCCTATTCGTATGTAGC 1483
Query 1479 GGTCGGGTCAAGCGGGGATGACCTAGACGCCATGGCTGAGCCATTGCCAAAGATTAATAA 1538
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1484 GGTTGGATCAAGCGGGGATGACCTAGACGCAATGGCTGAGCCATTGCCAAAGATTAATAA 1543
Query 1539 GAAGGTTGGTCAGGTGAATGGTCATGATCAAGCCAAGGTTCATGAGCTTCAAGTCATGTT 1598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 GAAGGTTGGTCAGGTCAATGGTCATGATCAAGCCAAGGTTCATGAGCTTCAAGTCATGTT 1603
Query 1599 TGCAGGGGAAGCAACACATAGAACCCATTACTCCACAACTCATGGTGCCTACTATAGTGG 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TGCAGGGGAAGCAACACATAGAACCCATTACTCCACAACTCATGGTGCCTACTATAGTGG 1663
Query 1659 TTTAAGGGAAGCCAATAGGCTTCTCAAGCATTACAAATGTAATTTTTGAGTGTTAATTTT 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TTTAAGGGAAGCCAATAGGCTTCTCAAGCATTACAAATGTAATTTTTGAGTGTTAATTTT 1723
Query 1719 TTAAGAATATGTTCTGtttttttt----GGG-TAAAATGTGTTTAGAGAAGCATAGTTAG 1773
| || ||||||||||||||||||| ||| ||| |||||||||||||||||| ||||
Sbjct 1724 T-AA-AATATGTTCTGTTTTTTTTTTTTGGGGTAA--TGTGTTTAGAGAAGCATAATTAG 1779
Query 1774 ttttgtaagattttttaattgtttaccttcaatttttttt 1813
||||||||||||||||||||||||| ||||||||||||||
Sbjct 1780 TTTTGTAAGATTTTTTAATTGTTTAACTTCAATTTTTTTT 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5