BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491794
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29680.1 | Symbols: | Alkaline-phosphatase-like family prot... 2678 0.0
> AT4G29680.1 | Symbols: | Alkaline-phosphatase-like family protein
| chr4:14537781-14539594 REVERSE LENGTH=1814
Length=1814
Score = 2678 bits (1450), Expect = 0.0
Identities = 1684/1795 (94%), Gaps = 24/1795 (1%)
Strand=Plus/Plus
Query 1 AGAAGAGAAGCAATGATCTCCGGCGACACATTATCAGCTAAACAACCCAAATCGA-TTCC 59
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||
Sbjct 26 AGAAGAGAAGCAATGATCTCCGGCGACACATTATCAGCTAAAAAACCTAAATC-AGTTCC 84
Query 60 ACCAGAAGAAGACCAAGACCCACCAAGCCAATCTATCGCACTTCTCGACAATCACACAGA 119
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 85 ACAAGAAGAAGACCAAGACCCACCAAGCCAATCAATCGCACTTCTCGACAATCACACAGA 144
Query 120 TTCCTCCGACTCTGATTCTTCCACTAGTAGTATCTCAAGCTGCTTCATCTTCACATCTCT 179
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 145 TTCCTCCGGTTCTGATTCTTCCACTAGAAGCATCTCAAGCTGCTTCATCTTCACATCTCT 204
Query 180 CCTTCTCGTCACCTGCATCGCTCTATCCGCCGCTTCAGCTTTCGCGTTCCTCTTCTTCTC 239
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 205 ACTTCTCGTCACCTGCATCGCTCTATCCGCCGCTTCAGCTTTCGCCTTCCTCTTCTTCTC 264
Query 240 TTCCCAAAAACCTGTCCTTTCCTTAAACCAAGTCTCAAAGTCACCAGCTTTCGACAGATC 299
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 265 TTCTCAAAAACCTGTCCTTTCCTTAAACCAAATCTCAAAGTCACCAGCTTTCGACAGATC 324
Query 300 CGTAGCTCGTCCACTCAAGAAACTCGACAAGCCTGTGGTTCTTTTGATTTCCTCAGATGG 359
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 325 CGTAGCTCGTCCGCTCAAGAAACTCGACAAGCCTGTTGTTCTTTTGATTTCATCAGATGG 384
Query 360 GTTTCGCTTCGGGTATCAATTCAAGACCAAATTGCCGAGCATTCACCGGTTAATCGCTAA 419
|||||| |||||||| || |||||||||||| | |||||||| ||| | ||||| || ||
Sbjct 385 GTTTCGTTTCGGGTACCAGTTCAAGACCAAACTACCGAGCATCCACAGATTAATAGCCAA 444
Query 420 CGGGACCGAAGCTGAGACGGGTTTAATCCCTGTTTTTCCGACACTAACTTTCCCGAACCA 479
||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 445 CGGAACCGAAGCTGAGACTGGTCTAATCCCTGTTTTTCCGACACTAACTTTCCCTAACCA 504
Query 480 TTACTCTATCGTCACAGGTCTATACCCAGCTTATCATGGAATCATCAACAA-CAGGTTCG 538
|||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 505 TTACTCTATCGTCACAGGTCTATACCCAGCTTATCATGGAATCATCAATAACCA-CTTTG 563
Query 539 TTGATCCAGAAACAGGGAACGTTTTCACAATGGCTAGTCATGAACCAGAGTGGTGGTTAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TTGATCCAGAAACAGGGAACGTTTTCACAATGGCTAGTCATGAACCAGAGTGGTGGTTAG 623
Query 599 GTGAGCCATTGTGGGAGACAGTAGTAAATCAAGGGCTTAAGGCTGCTACTTACTTCTGGC 658
||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 624 GTGAGCCTTTGTGGGAGACAGTTGTGAACCAAGGACTTAAGGCTGCTACTTACTTCTGGC 683
Query 659 CTGGCTCTGAGGTACACAAAGGCTCTTGGAATTGTCCTGAAGGTTTATGTCAAAGCTACA 718
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 684 CTGGCTCTGAGGTACACAAAGGCTCTTGGAATTGTCCTCAAGGTTTATGTCAAAACTACA 743
Query 719 ATGGGTCAGTTCCTTTTGATGATAGGGTTGATACTATTTTGAGCTATTTCGATTTGCCTA 778
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATGGCTCTGTTCCTTTTGATGATAGGGTTGATACTATTTTGAGCTATTTCGATTTGCCTA 803
Query 779 GTAGCGAAATCCCGAGTTTCATGACTCTTTACTTTGAAGATCCTGATCATCAAGGTCACC 838
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 804 GTAACGAAATCCCGAGTTTTATGACGCTTTACTTTGAAGATCCTGATCATCAAGGTCACC 863
Query 839 AAGTTGGCCCTGATGATCCTCAGATCACGGAAGCTGTAGTTAACATTGATCGGTTAATAG 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 864 AAGTTGGCCCTGATGATCCTCAGATCACAGAAGCTGTAGTTAACATTGATCGGTTAATAG 923
Query 899 GAAGATTAATTGATGGGTTAGAAAAACGAGGGATTTTTGAGGATGTGACTATGATTATGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GAAGATTAATTGATGGGTTAGAAAAACGAGGGATTTTTGAGGATGTGACTATGATTATGG 983
Query 959 TTGGTGATCATGGAATGGTTGGAACATGCGATAAAAAAGTGGTTGTGTTGGATGATTTGG 1018
||||||||||||||||||||||||| |||||||||||| |||| || || |||||||| |
Sbjct 984 TTGGTGATCATGGAATGGTTGGAACTTGCGATAAAAAATTGGTGGTTTTAGATGATTTAG 1043
Query 1019 CTCCTTGGATCAAAATCCCGAGTAGTTGGGTTCAGTATTACACTCCGTTGCTAGCGATTA 1078
||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct 1044 CTCCTTGGATCAAAATCCCTAGCAGTTGGGTACAGTACTACACTCCGTTGCTAGCGATTC 1103
Query 1079 AACCCCCTTCAGGGTACGATGCAGCGGATATCGTGGCTAAGATAAACGAAGGGTTGAACT 1138
|||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct 1104 AACCCCCTTCAGGGCACGATGCAGCGGATATAGTGGCTAAGATAAACGAAGGTTTGAGCT 1163
Query 1139 CGGGTAAAGTAGAGAATGGGAAGTACTTGAAGGTTTATCTCAAAGAGGATTTACCTAGCA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CGGGTAAAGTAGAGAATGGGAAGTACTTGAAGGTTTATCTCAAAGAGGATTTACCTAGCA 1223
Query 1199 GGCTGCATTATGTAGACAGTGACCGCATCCCGCCTATTATAGGACTAGTGGATGAGGGCT 1258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1224 GGCTGCATTATGTAGACAGTGACCGCATCCCGCCTATTATAGGACTAGTCGATGAGGGCT 1283
Query 1259 TCAAGGTGGAGCAGAAGAAAAGTAAAGCCAAGGAATGCGGTGGAGCTCACGGGTATGACA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TCAAGGTGGAGCAGAAGAAAAGTAAAGCCAAGGAATGCGGTGGAGCTCACGGGTATGACA 1343
Query 1319 ATGCCTTCTTTTCGATGAGAACTATATTCATTGGGCACGGGCCTATGTTCGCAAAAGGAA 1378
||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||
Sbjct 1344 ATGCCTTCTTTTCGATGAGAACTATATTCATCGGGCATGGTCCTATGTTCTCAAAAGGAA 1403
Query 1379 GGAAAGTGCCTTCATTTGAGAATGTTCAGATATACAATGTTATCAGTTCGATTCTAGGAC 1438
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1404 GGAAAGTGCCTTCTTTTGAGAATGTTCAGATATACAATGTGATCAGTTCGATTCTAGGAC 1463
Query 1439 TTAAGGCTGCACCAAACAATGGATCCGACGAGTTTCCTGCAAACGTTCTCTTGCCACGCG 1498
||||||| ||||||||||||||||| || |||||| || ||| | |||||||||||||||
Sbjct 1464 TTAAGGCAGCACCAAACAATGGATCTGATGAGTTTTCTTCAAGCATTCTCTTGCCACGCG 1523
Query 1499 TGTAGCAGAGTAGGGTAAGTTCATTCTTCTGTCAATAAAAGGCAGTCTAGACTCTTAAGA 1558
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1524 TGTAGAAGAGTAGGGTAAGTTTATTCTTCTGTCAATAAAAGGCAGTCTAGACTCTTGAGA 1583
Query 1559 CTTTGTTGTCAAAACATAAACGAGTTTGATCTGTTAGAC-TATTTATGCGTTTTGATCTG 1617
|||||||||||||||||||||| |||||| || |||||| | ||||||||||||||||||
Sbjct 1584 CTTTGTTGTCAAAACATAAACGCGTTTGACCTCTTAGACGT-TTTATGCGTTTTGATCTG 1642
Query 1618 AATGCTGTTTCTGTATGATTTCATCA--AC-TT--A--AA--CGTATTCTAGTATTTTGG 1668
| |||||||| ||||||||||||||| | || | || |||||| |||||||| ||
Sbjct 1643 ATTGCTGTTTTTGTATGATTTCATCACGAAGTTGCACTAAAACGTATTGTAGTATTTCGG 1702
Query 1669 AGTATGTAATCGTTAAAACTTGTCTTGACATTTGATGCGAAGATTGGAAGCTTTGTACTT 1728
|||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1703 AGTATG-AA-----A---CTTGTCTTGACATTTGATGCCAAGATTGGAAGCTTTGTACTT 1753
Query 1729 TCCTCCAAAGAAACAATGCTTTGAATTGGATACTCGATTCTTTGCCAATAATTGG 1783
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 TCCTTCAAAGAAACAATGCTTTGAATTGGATACTCGATTCTTTGCCAATAATTGG 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88202357565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5