BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491796
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29670.2 | Symbols: ACHT2 | atypical CYS HIS rich thioredox... 1136 0.0
> AT4G29670.2 | Symbols: ACHT2 | atypical CYS HIS rich thioredoxin
2 | chr4:14535607-14537250 REVERSE LENGTH=1229
Length=1229
Score = 1136 bits (615), Expect = 0.0
Identities = 696/733 (95%), Gaps = 13/733 (2%)
Strand=Plus/Plus
Query 1 GAGACATGATGAGAGAAATATCACTGGAATCTGAACCAGACAGTTTCTGATCTTCTTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GAGACATGATGAGAGAAATATCACTGGAATCTGAACCAGACAGTTTCTGATCTTCTTCTC 67
Query 61 C-TAGAGGATCTCTCGGAGAAGATTCAAAACC---AA-AA-C-CAATCTC-A---CTCTC 109
| |||||||||||||||||||||||||||||| || || | || |||| | |||||
Sbjct 68 CTTAGAGGATCTCTCGGAGAAGATTCAAAACCAAGAACAATCTCAGTCTCTATCTCTCTC 127
Query 110 TCTGGGTTCATTTAGATGGCTGGAGTTGTGCGATTAACGGCGACGTCGGTTCAAGCCATT 169
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 128 TCTGGGTGCATTTAGATGGCTGGAGTTGTGCGATTAACGACGACGTCGGTTCAAGCCATT 187
Query 170 CGCGTCTCCTCGTCCTTCAGCTCCTTCGCCACCGCTCTTAATCCTCTGCAACCTTGTC-T 228
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 188 CGTGTCTCCTCGTCCTTCAGCTCCTTTGCCACCGCTCTTAATCCTCTGCAACCTTG-CTT 246
Query 229 ACCTTCAAATTCGAATCTGAATTCCGACAAGAGATTGCGTCTTCTCTCATCTTCTCCTTC 288
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACCTCCAAACTCGAATCTGAATTCCGACAAGAGATTGCGTCTTCTCTCATCTTCTCCTTC 306
Query 289 GTGCTCGTCTTCTCATTACCATCCATCTTCTGGTTTCGGAAGCCATAGCCTTCTTAAACG 348
|||||||||||||||||||| |||||||||||| ||||||||||| || |||| |||
Sbjct 307 CTGCTCGTCTTCTCATTACCACCCATCTTCTGGTCTCGGAAGCCATCTCCCCCTTAGACG 366
Query 349 ACCCAAGAGCCAGGTGGTTCGTGTCAAGGTAGATGAAAATGTAGCCGAGACAGAGCCACC 408
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACCCAAGAGCCAAGTGGTTCGTGTCAAGGTAGATGAAAATGTAGCCGAGACAGAGCCACC 426
Query 409 GAAATGGTGGGAGAGGAATGCTCCAAACATGGTCGACATTCATTCTACTGAAGAGTTCTT 468
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 427 GAAATGGTGGGAGAGGAATGCTCCAAACATGGTCGATATTCATTCTACTGAAGAGTTCTT 486
Query 469 GAGCGCTTTAAGCGGAGCGGGTGAAAGATTAGTCATTGTAGAGTTTTATGGAACTTGGTG 528
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 487 GAGCGCTTTAAGCGGTGCGGGTGAAAGATTAGTTATTGTAGAGTTTTATGGAACTTGGTG 546
Query 529 TGCTTCTTGCAGAGCATTGTTCCCAAAGCTTTGCAAGACAGCGGTGGAACATCCCGATAT 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGCTTCTTGCAGAGCATTGTTCCCAAAGCTTTGCAAGACAGCGGTGGAACATCCCGATAT 606
Query 589 AGTGTTCCTCAAAGTAAACTTTGATGAGAATAAACCAATGTGCAAGAGTTTGAACGTGAG 648
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 607 AGTGTTCCTTAAAGTAAACTTTGATGAGAATAAACCGATGTGCAAGAGTTTGAACGTGAG 666
Query 649 AGTGCTTCCTTATTTCCACTTTTACCGTGGAGCTGATGGCCAGCTTGAGTCCTTCTCATG 708
||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 667 AGTGCTTCCTTTTTTCCACTTTTACCGTGGAGCTGATGGTCAGCTTGAGTCATTCTCATG 726
Query 709 TTCTCTTGCTAAG 721
|||||||||||||
Sbjct 727 TTCTCTTGCTAAG 739
Score = 442 bits (239), Expect = 3e-123
Identities = 266/279 (95%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 720 AGTTTCAGAAGATAAAAGATGCCATCCAACTGCACAACACCGATCGTTGCAGCCTCGGTC 779
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 952 AGTTTCAGAAGATAAAAGATGCAATCCAACTGCACAATACCGATCGTTGCAGCCTCGGTC 1011
Query 780 CAGCCAAGGTACCTGAAGGATTAACCTTAGCCAAACCAGCTGGATCAAGTTGAAGTGCCA 839
||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 1012 CAGCCAAGGTACCTGAAGGCTTAACATTAGCCAAACCAGCTGCATCAAGTTGAAGTGCCA 1071
Query 840 GACTTTTAGATATATTACTAAGGCAACAATCTTTGGTTGCTCAAGCAAATACTCAGCTTA 899
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GATTTTTAGATATATTACTAAGGCAACAATCTTTGGTTGCTCAAGCAAATACTCAGCTTA 1131
Query 900 AAATTCTGTATATCGTCATATTTTTTGGTGTAAAAGAATACTTCCTGAATCCAATTACGA 959
||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||
Sbjct 1132 AAATTCTGTATATCGTCATATTTTTGGGTGTAAAAGAATACTTCCTAAAGCCAGTTACGA 1191
Query 960 TTCTTCTGCTAATACG-CAAGTGCAAATGTATTTTCACT 997
|||||||||||||| | ||| ||||||||||||||||||
Sbjct 1192 TTCTTCTGCTAATA-GTCAATTGCAAATGTATTTTCACT 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5