BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491799
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29620.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1581 0.0
AT4G29600.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1075 0.0
AT4G29630.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 726 0.0
> AT4G29620.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14519863-14521087 FORWARD LENGTH=1225
Length=1225
Score = 1581 bits (856), Expect = 0.0
Identities = 1006/1079 (93%), Gaps = 8/1079 (1%)
Strand=Plus/Plus
Query 1 TCAACATAAAATCTCAAAACACGACAATGGCACAACGTCCTAACTTGTTATCTCATTTGC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCAACATAAAATCACAAAACACGACAATGGCACAACGTCCTAACTTGTTATCTCATTTGC 63
Query 61 AAGATCTGGTCACAAAAATTAAAAACATGACAATGGCACAAGATCGGTACAAGTTCGTTT 120
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 64 AAGATCTGGTCACCAAATTTAAAAACATGACAATGGCACAAGATCGGTTCAAGTTCGTTT 123
Query 121 TCACTGCCAACGAAGCAGCAGCT-GAAGGCGTCACCGAACCCATCAGACTTCCAAATCTA 179
||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||||||
Sbjct 124 TCACTGCCAACGAAGCAGC-GTTGGAAGGTGTCACCGACCCCATCAGACTTCCAAATCTG 182
Query 180 ATCAGGAAGGCGATGTCACTCGCTCGGGCTCCAATCTCCAAATACAAAGTCGGAGCCGTT 239
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATCAGAAAGGCGATGTGTCTCGCTCGGGCTCCAATCTCCAAATACAAAGTCGGAGCCGTT 242
Query 240 GGACGCACATCATCTGGTCGGGTCTACTTAGGCGTCAATGTCGACTTCCCAGGTCTTCCT 299
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGACGCGCATCATCAGGTCGGGTCTACTTAGGCGTCAATGTCGACTTCCCAGGTCTTCCT 302
Query 300 CTTCACCACTCCATCCACGCCGAGCAATTCCTCGTCACCAACCTCGCCCTCAACTCCGAG 359
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 303 CTTCACCACTCCATCCACGCCGAGCAATTCCTCGTTACCAACCTCGCACTCAACTACGAG 362
Query 360 AAAGACCTCTGTGAGTTAGCCGTCGCCATCTCTGTTGACGGCAAAGAATTCGGCACGCCG 419
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 363 AAAGACCTCTGTAAGTTAGCCGTCGCCATCTCTACTGACGGCCTCGAATTCGGCACACCG 422
Query 420 TGCGGACACTGCCGCCAGTTTCTTATGGAGATGAGCAACGCGCTTGACATCAAAATCATG 479
|||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||| ||
Sbjct 423 TGCGGAAACTGCCTCCAATTTCTTATGGAGATGAGCAACGCGCTTGATATGAAAATCCTG 482
Query 480 TCCAAACCAAAGCATGAAGCAGGATCATTCTCGAGCCTTAGACACCTCCTTCCGAACGTC 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 483 TCCAAACCAAAGCATGAAGCAGGATCATTCTCGAGCCTTAGACTCCTCCTTCCGAACGTC 542
Query 540 CTCCCGAAAGGTTCCCCTTTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTCTCGGGT 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 CTCCCGAAAGGTTCCCCTTTCCTTCTCGAGAAGCGCTATAACTGCCTCACCCTCTCGGGT 602
Query 600 CCTGCCGGAGAGATATGCTCATCAGACTGTTCACATTTGATGTGCAAGGCTCTAGCCGCA 659
||||||||||||||||||||| ||| ||||| ||||||| | ||| |||||| |||||
Sbjct 603 TCTGCCGGAGAGATATGCTCATTAGATTGTTCCCATTTGAAGCGCAGGGCTCTGGCCGCG 662
Query 660 GCAAACAATTCGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTGGCGCTGCTGGATAAC 719
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 663 GCAAACAATTCGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTAGCGCTGCTGGATAAC 722
Query 720 GACGGGAAGTGGTACTATGGATGGTACATTGAATCAGTGGCGTCTAACCCTAGTTTTGGA 779
|||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 723 GACGGGAACTGGTACCGTGGATGGTATATTGAATCAGTGGCGTCGAACCCTAGTTTGGGT 782
Query 780 CCGGTACAAGCTGCGCTGGTTGATTTTGTGACTCGTAGCCGAGGCAAAAGGTTCAATAAG 839
|||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct 783 CCGGTACAAGCTGCGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAATGTTCAATAAG 842
Query 840 ATCGTCCGAGCGGTGCTGGTGGAAAAGAATAACGCGATCGTGAGTCAAGAGCGCACAGCG 899
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 843 ATCGTCCAAGCGGTGCTGGTGGAAAAGAATAACGCGAGCGTGAGTCAAGAGCGCACAGCG 902
Query 900 AAGATGATTTTAGACACTATAGCAGCTCCAAACTGCGATTTCAAGGTCTTTCATTGCTCT 959
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 903 AAGATAATTTTAGACACTATAGC---TCCGAACTGCGATTTCAAGGTCTTTCATTGCTCC 959
Query 960 GTGGATGGCGCAAAAAGACTCAAGTATCTTCGTGATACGCTGGTGATAGATACATCAGTA 1019
|||||| ||||||||||||| |||||||||||||| || |||||||||||||| | ||
Sbjct 960 GTGGATTGCGCAAAAAGACTGAAGTATCTTCGTGAAACCCTGGTGATAGATACGT---TA 1016
Query 1020 GGGGATTACACTGGTCTTCACTATTAAACTATTTTATTATCCTATCATAATAATGCTTT 1078
|||||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||
Sbjct 1017 GGGGATTACACTGGTCTTCATTATTAAACTAATTTATTATTCTATCATAATTATGCTTT 1075
Score = 128 bits (69), Expect = 1e-28
Identities = 85/93 (91%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1084 TTTTAATAATGTCATAGAATCGTAATTATGTTATGTTGTCCTCTTGGGTTCATGTTACCT 1143
||||||||||||||||||||| |||||| |||||||| || ||| |||||||||||| |
Sbjct 1121 TTTTAATAATGTCATAGAATCATAATTACGTTATGTTTTCTTCTCCGGTTCATGTTACTT 1180
Query 1144 TTCATTTCAGTGGTGTCAATATATAATATATTC 1176
|| ||||||||||||||||||||||||||||||
Sbjct 1181 TTAATTTCAGTGGTGTCAATATATAATATATTC 1213
> AT4G29600.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14515578-14516501 FORWARD LENGTH=924
Length=924
Score = 1075 bits (582), Expect = 0.0
Identities = 805/908 (89%), Gaps = 34/908 (4%)
Strand=Plus/Plus
Query 95 GGCACAAGATCGGTACAAGTTCGTTTTCACTGCCAACGAAGCAGCAGCTGAAGGCGTCAC 154
|||||||||| |||||||||||||||||||||||| ||||||||| | ||||| |||||
Sbjct 6 GGCACAAGATAAGTACAAGTTCGTTTTCACTGCCAAAGAAGCAGCATCGGAAGGTGTCAC 65
Query 155 CGAACCCATCAGACTTCCAAATCTAATCAGGAAGGCGATGTCACTCGCTCGGGCTCCAAT 214
||||||||||||||||||||| || ||||| ||||||||||| || ||||||| ||||||
Sbjct 66 CGAACCCATCAGACTTCCAAAGCTGATCAGAAAGGCGATGTCTCTGGCTCGGGGTCCAAT 125
Query 215 CTCCAAATACAAAGTCGGAGCCGTTGGACGCACATCATCTGGTCGGGTCTACTTAGGCGT 274
||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 126 CTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCGGGTCGGGTCTATTTAGGCGT 185
Query 275 CAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCCTCGT 334
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 186 CAATGTCGAATTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCGT 245
Query 335 CACCAACCTCGCCCTCAACTCCGAGAAAGACCTCTGTGAGTTAGCCGTCGCCATCTCT-G 393
|||||||||||| || ||||||||||||| ||| || ||||||| |||||||||||| |
Sbjct 246 CACCAACCTCGCACTAAACTCCGAGAAAGGTCTCCGTCAGTTAGCAGTCGCCATCTCTAG 305
Query 394 TTGACGGCAAAGAATTCGGCACGCCGTGCGGACACTGCCGCCAGTTTCTTATGGAGATGA 453
|||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 306 -TGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 364
Query 454 GCAACGCGCTTGACATCAAAATCATGTC-CAAACCAAAGCATGAAGC---AGGATCATTC 509
|||||| |||||||||||||||| || | |||| ||||||||||||| ||||||||||
Sbjct 365 GCAACGAGCTTGACATCAAAATCCTG-CTCAAATCAAAGCATGAAGCAGAAGGATCATTC 423
Query 510 TCGAGCCTT-AG--ACACC-T-C---C---TT----CC-GA--ACGTCCTCCCGAAA-GG 550
||||||||| || | || | | | || || || |||||||||| ||| ||
Sbjct 424 TCGAGCCTTAAGCTCCTCCTTCCGTACAGATTCACCCCTGACGACGTCCTCCC-AAAGGG 482
Query 551 TTCCCCTTTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTCTCGGGTCCTGCCGGAGA 610
||||||| |||||||||||||||||||||||||||||||||| |||||| || ||| |||
Sbjct 483 TTCCCCTCTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTTTCGGGTTCTACCGAAGA 542
Query 611 GATATGCTCATCAGACTGTTCACATTTGATGTGCAAGGCTCTAGCCGCAGCAAACAATTC 670
||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 543 GATATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTC 602
Query 671 GTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTGGCGCTGCTGGATAACGACGGGAAGTG 730
|||||| |||||||| ||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 603 GTTCTCTCCGTACACTGAGTCTCCGTCGGGAGTGGCGCTGCAGGATGACGAAGGGAAGTG 662
Query 731 GTACTATGGATGGTACATTGAATCAGTGGCGTCTAACCCTAGTTTTGGACCGGTACAAGC 790
|||| |||||||||||||||||||||||||| || ||| ||||| ||||||||||||||
Sbjct 663 GTACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGC 722
Query 791 TGCGCTGGTTGATTTTGTGACTCGTAGCCGAGGCAAAAGGTTCAATAAGATCGTCCGA-G 849
||| ||||||||||| ||| ||||||||||||| ||| |||||||||||||||| || |
Sbjct 723 TGCTCTGGTTGATTTCGTGGCTCGTAGCCGAGGGAAAGGGTTCAATAAGATCGTA-GAAG 781
Query 850 CGGTGCTGGTGGAAAAGAATAACGCGATCGTGAGTCAAGAGCGCACAGCGAAGATGATTT 909
||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 782 CGGTGCTTGTGGAAAAGAATAACGCGAGGGTGAGTCAAGAGCGCACGGCGAAGATGATTT 841
Query 910 TAGACACTATAGCAGCTCCAAACTGCGATTTCAAGGTCTTTC-ATTGCT-CTGTGGATGG 967
||||||||||||||||||| ||||||||||||||||| |||| |||||| | ||||||
Sbjct 842 TAGACACTATAGCAGCTCCGAACTGCGATTTCAAGGT-TTTCCATTGCTAC-GTGGATCT 899
Query 968 CGCAAAAA 975
| ||||||
Sbjct 900 C-CAAAAA 906
> AT4G29630.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14522569-14523240 FORWARD LENGTH=672
Length=672
Score = 726 bits (393), Expect = 0.0
Identities = 585/674 (87%), Gaps = 27/674 (4%)
Strand=Plus/Plus
Query 93 ATGGCACAAGATCGGTACAAGTTCGTTTTCACTGCCAACGAAGCAGCAGCTGAAGGCGTC 152
||||||||||||| ||||||||||||||||||||| || ||||||| | | |||||||||
Sbjct 1 ATGGCACAAGATCAGTACAAGTTCGTTTTCACTGCTAAAGAAGCAGAATCGGAAGGCGTC 60
Query 153 ACCGAACCCATCAGACTTCCAAATCTAATCAGG-AAGGCGATGTCACTCGCTCGGGCTCC 211
||||||||||| || ||||||||||| ||| || ||||||||||||||||||| ||||||
Sbjct 61 ACCGAACCCATGAGGCTTCCAAATCTGATC-GGAAAGGCGATGTCACTCGCTCTGGCTCC 119
Query 212 AATCTCCAAATACAAAGTCGGAGCCGTTGGACGCACATC-ATCTGGTCGGGTCTACTTAG 270
|||||||||||||||||||||||||||||||||| || | ||| |||||| |||||||||
Sbjct 120 AATCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCA-CGATCGGGTCGGATCTACTTAG 178
Query 271 GCGTCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCC 330
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCGTCAATGTCGAATTACCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCC 238
Query 331 TCGTCACCAACCTCGCCCTCAACTCCGAGAAAGACCTCTGTGAGTTAGCCGTCGCCATCT 390
|||||||||||||||| |||||||||||||||| |||| | |||||||||| ||||||
Sbjct 239 TCGTCACCAACCTCGCACTCAACTCCGAGAAAGGCCTCCATCTGTTAGCCGTCACCATCT 298
Query 391 CTGTTGACGGCAAAGAATTCGGCACGCCGTGCGGACACTGCCGCCAGTTTCTTATGGAGA 450
|| |||||| || || |||||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 299 CTACTGACGGTAACGATTTCGGCGCACCGTGTGGAAACTGCCGCCAGTTTCTTATGGAGA 358
Query 451 TGAGCAACGCGCTTGACATCAAAATCATG-TCCAAACCAAAGCATGAAGCAGGA---TCA 506
| ||||| || ||| ||||||||||| || || ||| |||| ||||||||| | |||
Sbjct 359 TCAGCAAAGCCCTTAACATCAAAATCCTGCTC-AAATCAAAATATGAAGCAGAAGGGTCA 417
Query 507 TTCTCGAGCCTTAGACACCTCCTTCCGAAC-G-T-C-CTCCCGA--A---------A--G 549
||| ||||||||||| |||||||||| || | | | ||||||| | | |
Sbjct 418 TTCAAGAGCCTTAGACTCCTCCTTCCGGACAGATTCTCTCCCGACGATGTCCTCCCAAAG 477
Query 550 G-TTCCCCTTTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTCTCGGGTCCTGCCGGA 608
| ||||||| ||||||||||||||||| |||||||||||| ||| |||||| |||||| |
Sbjct 478 GGTTCCCCTCTCCTTCTCGAGAAGCGCCATAACTGCCTCAGCCTTTCGGGTTCTGCCGAA 537
Query 609 GAGATATGCTCATCAGACTGTTCACATTTGATGTGCAAGGCTCTAGCCGCAGCAAACAAT 668
||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 538 GAGATATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAAT 597
Query 669 TCGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTGGCGCTGCTGGATAACGACGGGAAG 728
||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||
Sbjct 598 TCGTTCTCGCCGTACACTAACTCTCCGTCGGGAGTGGCGCTGCAGGATGACGACGGGAAC 657
Query 729 TGGTACTATGGATG 742
|||||| ||||||
Sbjct 658 TGGTACCGTGGATG 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5