BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491800
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29600.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1375 0.0
AT4G29620.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 987 0.0
AT4G29630.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 835 0.0
AT4G29640.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 195 9e-49
> AT4G29600.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14515578-14516501 FORWARD LENGTH=924
Length=924
Score = 1375 bits (744), Expect = 0.0
Identities = 862/920 (94%), Gaps = 3/920 (0%)
Strand=Plus/Plus
Query 3 GGCACAAGATAAGTACAAGTTTGTTTTCACTGCCAACGAAGCAGCATCGGAAGGTGTCAC 62
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 6 GGCACAAGATAAGTACAAGTTCGTTTTCACTGCCAAAGAAGCAGCATCGGAAGGTGTCAC 65
Query 63 CGAACCCATCAGACTTCCAAAGCTCATCAGAAAGGCGATGTCAT-TGGCTAGGGGTCAAA 121
|||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||| ||
Sbjct 66 CGAACCCATCAGACTTCCAAAGCTGATCAGAAAGGCGATGTC-TCTGGCTCGGGGTCCAA 124
Query 122 TCTCCAAATACAAAATCGGAGCGGTTGGACGCGCATCATCGGGTCGGGTCTACTTAGGAG 181
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 125 TCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCGGGTCGGGTCTATTTAGGCG 184
Query 182 TCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCG 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCAATGTCGAATTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCTCG 244
Query 242 TAACCAACCTCGCCCTTAACTTCGAGAAAGGCCTCCGTCAGTTAGCTGTCGCCATCTCTA 301
| ||||||||||| || |||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 245 TCACCAACCTCGCACTAAACTCCGAGAAAGGTCTCCGTCAGTTAGCAGTCGCCATCTCTA 304
Query 302 ATGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGACCA 364
Query 362 GCAACGAGGTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATTCG 421
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GCAACGAGCTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATTCT 424
Query 422 GGAAACTTAAACTCCTCCTTCCGTACAGATTCTCCCCCGACGACGTCCTTCCAAAGGGTT 481
|| ||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 425 CGAGCCTTAAGCTCCTCCTTCCGTACAGATTCACCCCTGACGACGTCCTCCCAAAGGGTT 484
Query 482 CCCCTCTCCTTCTCGAGAAGCGCGATAACTGTCTCATCCTCTCGCGTTCTGCCGGAGAGA 541
||||||||||||||||||||||||||||||| |||| ||| ||| ||||| ||| |||||
Sbjct 485 CCCCTCTCCTTCTCGAGAAGCGCGATAACTGCCTCACCCTTTCGGGTTCTACCGAAGAGA 544
Query 542 TATGCTCGTCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTCTT 601
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 545 TATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTCGT 604
Query 602 TCTCGCCGTACACTGACTCTCCCTCGGGAGTGGCGCTGCGGGATGAGGACGGGATCTTGT 661
|||| ||||||||||| ||||| |||||||||||||||| |||||| || |||| | ||
Sbjct 605 TCTCTCCGTACACTGAGTCTCCGTCGGGAGTGGCGCTGCAGGATGACGAAGGGAAGTGGT 664
Query 662 ACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGCTG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAGCTG 724
Query 722 CGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAGGGTTCGATAAGATCGTTGAAGCGG 781
| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 725 CTCTGGTTGATTTCGTGGCTCGTAGCCGAGGGAAAGGGTTCAATAAGATCGTAGAAGCGG 784
Query 782 TGCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTTTAG 841
|||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 785 TGCTTGTGGAAAAGAATAACGCGAGGGTGAGTCAAGAGCGCACGGCGAAGATGATTTTAG 844
Query 842 ACACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCGACGTGGATTTCCAAA 901
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 845 ACACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCTACGTGGATCTCCAAA 904
Query 902 AAA-GTATATTAGTGAATAG 920
||| || ||||| |||||||
Sbjct 905 AAAAGTTTATTACTGAATAG 924
> AT4G29620.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14519863-14521087 FORWARD LENGTH=1225
Length=1225
Score = 987 bits (534), Expect = 0.0
Identities = 788/907 (87%), Gaps = 31/907 (3%)
Strand=Plus/Plus
Query 1 ATGGCACAAGATAAGTACAAGTTTGTTTTCACTGCCAACGAAGCAGCATCGGAAGGTGTC 60
|||||||||||| || |||||| ||||||||||||||||||||||| | ||||||||||
Sbjct 96 ATGGCACAAGATCGGTTCAAGTTCGTTTTCACTGCCAACGAAGCAGCGTTGGAAGGTGTC 155
Query 61 ACCGAACCCATCAGACTTCCAAAGCTCATCAGAAAGGCGATGTCAT-TGGCTAGGGGTCA 119
||||| ||||||||||||||||| || |||||||||||||||| | | ||| ||| ||
Sbjct 156 ACCGACCCCATCAGACTTCCAAATCTGATCAGAAAGGCGATGT-GTCTCGCTCGGGCTCC 214
Query 120 AATCTCCAAATACAAAATCGGAGCGGTTGGACGCGCATCATCGGGTCGGGTCTACTTAGG 179
|||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 215 AATCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCATCATCAGGTCGGGTCTACTTAGG 274
Query 180 AGTCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCT 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 275 CGTCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCCT 334
Query 240 CGTAACCAACCTCGCCCTTAACTTCGAGAAAGGCCTCCGTCAGTTAGCTGTCGCCATCTC 299
||| ||||||||||| || |||| |||||||| |||| || ||||||| |||||||||||
Sbjct 335 CGTTACCAACCTCGCACTCAACTACGAGAAAGACCTCTGTAAGTTAGCCGTCGCCATCTC 394
Query 300 TAATGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGAC 359
|| |||| || ||||||||||| | |||||||||||||||| ||| |||||||||||||
Sbjct 395 TACTGACGGCCTCGAATTCGGCACACCGTGCGGAAACTGCCTCCAATTTCTTATGGAGAT 454
Query 360 CAGCAACGAGGTTGACATCAAAATCCTGCT-CAAATCAAAGCATGAAGCAGAAGGATCAT 418
||||||| | |||| || ||||||||| | |||| ||||||||||||| ||||||||
Sbjct 455 GAGCAACGCGCTTGATATGAAAATCCTG-TCCAAACCAAAGCATGAAGC---AGGATCAT 510
Query 419 TCGGGAAACTTAAACTCCTCCTTCCGTACAGATTCTCCCCCGACGACGTCCTTCCAAAGG 478
|| || |||| ||||||||||||| | | || | | ||| | ||| |
Sbjct 511 TCTCGAGCCTTAGACTCCTCCTTCCG---A-A--------CGTC--C-TCC--CGAAA-G 552
Query 479 GTTCCCCTCTCCTTCTCGAGAAGCGCGATAACTGTCTCATCCTCTCGCGTTCTGCCGGAG 538
|||||||| ||||||||||||||||| ||||||| |||| ||||||| ||||||||||||
Sbjct 553 GTTCCCCTTTCCTTCTCGAGAAGCGCTATAACTGCCTCACCCTCTCGGGTTCTGCCGGAG 612
Query 539 AGATATGCTCGTCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATT 598
|||||||||| | ||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 613 AGATATGCTCATTAGATTGTTCCCATTTGAAGCGCAGGGCTCTGGCCGCGGCAAACAATT 672
Query 599 CTTTCTCGCCGTACACTGACTCTCCCTCGGGAGTGGCGCTGCGGGATGAGGACGGGATCT 658
| |||||||||||||| || ||||| |||||||| ||||||| |||| | ||||||| ||
Sbjct 673 CGTTCTCGCCGTACACCGAGTCTCCGTCGGGAGTAGCGCTGCTGGATAACGACGGGAACT 732
Query 659 TGTACCGTGGATGGTACATTGAATCAGTGGCGTATAGCCCAAGTTTGGGACCGGTACAAG 718
||||||||||||||| |||||||||||||||| | ||| |||||||| ||||||||||
Sbjct 733 GGTACCGTGGATGGTATATTGAATCAGTGGCGTCGAACCCTAGTTTGGGTCCGGTACAAG 792
Query 719 CTGCGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAGGGTTCGATAAGATCGTTGAAG 778
|||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct 793 CTGCGCTGGTTGATTTCGTGGCTCGTAGCCGAGGCAAAATGTTCAATAAGATCGTCCAAG 852
Query 779 CGGTGCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTT 838
|||||||||||||||||||||| ||||| |||||||||||| ||| |||||||| ||||
Sbjct 853 CGGTGCTGGTGGAAAAGAATAACGCGAGCGTGAGTCAAGAGCGCACAGCGAAGATAATTT 912
Query 839 TAGACACTATAGCAGCTCCGAACTGCGATTTCAAGGT-TTTCCATTGCGACGTGGATTTC 897
||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||| |
Sbjct 913 TAGACACTATAGC---TCCGAACTGCGATTTCAAGGTCTTTC-ATTGCTCCGTGGATTGC 968
Query 898 -CAAAAA 903
||||||
Sbjct 969 GCAAAAA 975
> AT4G29630.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14522569-14523240 FORWARD LENGTH=672
Length=672
Score = 835 bits (452), Expect = 0.0
Identities = 599/672 (89%), Gaps = 2/672 (0%)
Strand=Plus/Plus
Query 1 ATGGCACAAGATAAGTACAAGTTTGTTTTCACTGCCAACGAAGCAGCATCGGAAGGTGTC 60
|||||||||||| |||||||||| ||||||||||| || ||||||| ||||||||| |||
Sbjct 1 ATGGCACAAGATCAGTACAAGTTCGTTTTCACTGCTAAAGAAGCAGAATCGGAAGGCGTC 60
Query 61 ACCGAACCCATCAGACTTCCAAAGCTCATCAGAAAGGCGATGTCATTGGCTAGGGGTCAA 120
||||||||||| || |||||||| || ||| |||||||||||||| | ||| || || |
Sbjct 61 ACCGAACCCATGAGGCTTCCAAATCTGATCGGAAAGGCGATGTCACTCGCTCTGGCTCCA 120
Query 121 ATCTCCAAATACAAAATCGGAGCGGTTGGACGCGCATC-ATCGGGTCGGGTCTACTTAGG 179
||||||||||||||| ||||||| |||||||||||| | |||||||||| ||||||||||
Sbjct 121 ATCTCCAAATACAAAGTCGGAGCCGTTGGACGCGCA-CGATCGGGTCGGATCTACTTAGG 179
Query 180 AGTCAATGTCGACTTCCCAGGTCTTCCTCTTCACCACTCCATCCACCCCGAGCAATTCCT 239
||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 CGTCAATGTCGAATTACCAGGTCTTCCTCTTCACCACTCCATCCACGCCGAGCAATTCCT 239
Query 240 CGTAACCAACCTCGCCCTTAACTTCGAGAAAGGCCTCCGTCAGTTAGCTGTCGCCATCTC 299
||| ||||||||||| || |||| |||||||||||||| || |||||| ||| |||||||
Sbjct 240 CGTCACCAACCTCGCACTCAACTCCGAGAAAGGCCTCCATCTGTTAGCCGTCACCATCTC 299
Query 300 TAATGACTGCATCGAATTCGGCGCGCCGTGCGGAAACTGCCGCCAGTTTCTTATGGAGAC 359
|| |||| | | ||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 300 TACTGACGGTAACGATTTCGGCGCACCGTGTGGAAACTGCCGCCAGTTTCTTATGGAGAT 359
Query 360 CAGCAACGAGGTTGACATCAAAATCCTGCTCAAATCAAAGCATGAAGCAGAAGGATCATT 419
|||||| | || ||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 360 CAGCAAAGCCCTTAACATCAAAATCCTGCTCAAATCAAAATATGAAGCAGAAGGGTCATT 419
Query 420 CGGGAAACTTAAACTCCTCCTTCCGTACAGATTCTCCCCCGACGACGTCCTTCCAAAGGG 479
| || |||| ||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct 420 CAAGAGCCTTAGACTCCTCCTTCCGGACAGATTCTCTCCCGACGATGTCCTCCCAAAGGG 479
Query 480 TTCCCCTCTCCTTCTCGAGAAGCGCGATAACTGTCTCATCCTCTCGCGTTCTGCCGGAGA 539
||||||||||||||||||||||||| ||||||| |||| ||| ||| ||||||||| |||
Sbjct 480 TTCCCCTCTCCTTCTCGAGAAGCGCCATAACTGCCTCAGCCTTTCGGGTTCTGCCGAAGA 539
Query 540 GATATGCTCGTCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTC 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATATGCTCATCAGATTGTTCCCATTTGAAGTGCAAGGCTCTAGCCGCGGCAAACAATTC 599
Query 600 TTTCTCGCCGTACACTGACTCTCCCTCGGGAGTGGCGCTGCGGGATGAGGACGGGATCTT 659
||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||| ||
Sbjct 600 GTTCTCGCCGTACACTAACTCTCCGTCGGGAGTGGCGCTGCAGGATGACGACGGGAACTG 659
Query 660 GTACCGTGGATG 671
||||||||||||
Sbjct 660 GTACCGTGGATG 671
> AT4G29640.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14525830-14526870 FORWARD LENGTH=1041
Length=1041
Score = 195 bits (105), Expect = 9e-49
Identities = 185/223 (83%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 667 GGATGGTACATTGAATCAGTGGCGTAT-AGCCCA--AGTTTGGGACCGGTACAAGCTGCG 723
||||||||||||||| |||| | | || | ||| |||||||| || |||||||| |||
Sbjct 661 GGATGGTACATTGAAACAGT-G-G-ATCGGACCATTAGTTTGGGGCCAGTACAAGCGGCG 717
Query 724 CTGGTTGATTTCGTGGCTCGTAGCCG-AGGCAAAGGGTTCGATAAGATCGTTGAAGCGGT 782
|||||||||||| | |||||| | || |||||||||||||||||||||| || ||| ||
Sbjct 718 CTGGTTGATTTCATAGCTCGT-GGCGAAGGCAAAGGGTTCGATAAGATCACTGGAGCTGT 776
Query 783 GCTGGTGGAAAAGAATAATGCGAGGGTGAGTCAAGAGGGCATGGCGAAGATGATTTTAGA 842
||| ||||| ||||| |||||| |||| | ||||||| || ||||| || | || ||||
Sbjct 777 GCTAGTGGAGAAGAAGGATGCGAAGGTGGGGCAAGAGGACACGGCGAGGAAGCTTCTAGA 836
Query 843 CACTATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGC 885
| ||||||||||||||||||||||||||||| |||||||||
Sbjct 837 GAAGATAGCAGCTCCGAACTGCGATTTCAAGGTCTTCCATTGC 879
Score = 71.3 bits (38), Expect = 2e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 847 ATAGCAGCTCCGAACTGCGATTTCAAGGTTTTCCATTGCGACGTGGA 893
||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 970 ATAGCAGCTCCGAACTGCGATTTCAAGGTCTCCCATTGCGACGAGGA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5