BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491801
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29590.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1722 0.0
> AT4G29590.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:14512549-14514492
REVERSE LENGTH=1229
Length=1229
Score = 1722 bits (932), Expect = 0.0
Identities = 1028/1075 (96%), Gaps = 4/1075 (0%)
Strand=Plus/Plus
Query 1 TGCGACACATCATCTTCATCGTCATGTTCTCTCCT-AAAAGTTCAAACCTTTTTACAAAT 59
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1 TGCGACACATCATCTTCATCGTCATGTTCTGTCTTGCAAAGTTCAAACCTTTTTACAAAT 60
Query 60 CAGACAAAACCCAACAACTATTGAAACAATGTCAAAAACGGCTAATTTCCTCAGCCTCAG 119
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||
Sbjct 61 CAGACAAAACCCAACAATTAATGAAACAATGTCAAAAACGGCTAATTTTCTCAGCCTGAG 120
Query 120 ATCCAATCCTCTGCCTCCGATTTTCTCCTCCACCGGAGATTCTCCTTTCCTCCGAGCTTC 179
|||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 121 ATCCAATCCTCTACCTCCGATTTTCTCCTCCACCGGAAACTCTCCTTTCCTCCGAGCTTC 180
Query 180 CTCTGCTCTGAATCTTCCGACGGCTGCTTCGAAA---TTCCACCGTTGGATTCGCGCTTC 236
||| ||||||||||||||||| ||||||||||| |||||| |||||||||| |||||
Sbjct 181 CTCGGCTCTGAATCTTCCGACAACTGCTTCGAAACCTTTCCACAGTTGGATTCGTGCTTC 240
Query 237 TTCACGTCGCCGGTTGGTTCTTGGTGGTTTTGGCGGCGCTTCATTGTGGATGAACAACAA 296
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 241 TTCACGTCGCCGGTTGGTTCTCGGTGGTTTTGGCGGCGCTTCTTTGTGGATGAACAACAA 300
Query 297 CATGTCCGGTAATTTTGGCGGTAAATCTTTCATTGCGTCCGCTAGGCAGACGAATCCTTC 356
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 TATGTCCGGTAAATTTGGCGGTAAATCTTTCATTGCTTCCGCTAGGCAGACCAATCCTTC 360
Query 357 TCCGGTCGAACAGGCGTTGAATAAGGTGGATTGGCCCGAGACTTTCCCTTTCAAAGAAGA 416
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 TCCCGTCGAACAGGCGTTGAATAAGGTGGATTGGCCAGAGACTTTCCCTTTCAAAGAAGA 420
Query 417 AGATTTCCAGAGATTCGATGAGTCGTCTGATTCAACATTCTATGAAGCTCCAAGGTTTGT 476
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AGATTTCCAGAGATACGATGAGTCGTCTGATTCAACATTCTACGAAGCTCCAAGGTTTGT 480
Query 477 GACACACATTGATGATCCAGCCATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCC 536
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 GACACACATTGATGATCCAGCTATAGCTGCATTGACAAAGTATTACTCCAAGGTTTTGCC 540
Query 537 TCAGAGCGATACTCCGGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTA 596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAGAGCGATACTCCAGGAGTGAGCATACTCGATATGTGTAGCAGTTGGGTCAGTCATTA 600
Query 597 TCCACCGGGGTATAGGCAGGAACGAATAGTTGGAATGGGTATGAACGAAGAAGAGCTTAA 656
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 TCCACCGGGGTATAGGCAAGAACGAATAGTTGGAATGGGTATGAATGAAGAAGAGCTTAA 660
Query 657 GCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATCCAAAGCTGCC 716
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 661 GCGAAATCCGGTTCTCACCGAGTACATAGTCCAAGACTTAAATCTCAATTCAAATCTGCC 720
Query 717 TTTTGAAGACAATTCTTTCCAAGTTATTACCAATGTGGTAAGTGTGGATTATCTTACAAA 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 TTTTGAAGACAATTCTTTCCAAGTTATAACCAATGTGGTAAGTGTGGATTATCTTACAAA 780
Query 777 GCCACTTGAAGTTTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAAT 836
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCCGCTTGAAGTGTTCAAGGAAATGAACAGAATCCTTAAGCCCGGAGGACTCGCTCTAAT 840
Query 837 GAGCTTCTCGAACCGTTGCTTCTTTACGAAAGCAATCTCGATATGGACATCAACTGGCGA 896
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 GAGCTTCTCGAACCGTTGCTTCTTTACTAAAGCAATCTCGATATGGACATCAACTGGCGA 900
Query 897 TGCAGATCATGCTCTCATTGTCGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCC 956
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGCAGATCATGCTCTCATTGTTGGATCATACTTTCACTACGCCGGAGGATTTGAAGCTCC 960
Query 957 TCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTGTACTC 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 TCAGGCCGTTGATATATCTCCAAATCCAGGGCGTTCAGATCCTATGTACGTTGTTTACTC 1020
Query 1017 TAGAAAACTCCCCATGGCTTAAAGCTGAGGTCCAAACACTTCATGTATACACATA 1071
||||||||||||||||| ||||| ||||| ||||| ||| |||||||||||||||
Sbjct 1021 TAGAAAACTCCCCATGGTTTAAACCTGAGATCCAAGCACATCATGTATACACATA 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5