BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491802
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Fanconi A... 2902 0.0
> AT4G29560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Fanconi
Anaemia group E protein, C-terminal (InterPro:IPR021025); Has
41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses -
0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:14503873-14506014
REVERSE LENGTH=2045
Length=2045
Score = 2902 bits (1571), Expect = 0.0
Identities = 1867/2010 (93%), Gaps = 20/2010 (1%)
Strand=Plus/Plus
Query 1 AGAGCGAAGGACAAAATGGAGGAGTGGATTCCACTGTTGGACATTTTCTTGAAGAGTCCA 60
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 AGAGGGAAGGACAAAATGGAGGAGTGGATTCCACTATTCGACATTTTCTTGAAGAGTCCA 60
Query 61 TCTCCGGAGACCGAGGCTTCGCTGTGGCTAGACCAGGCTTCGAA-CTCTTCTTCTTCCTC 119
||||||||| | ||||||||||||||| |||||||||||||||| || || |||||||||
Sbjct 61 TCTCCGGAGGCTGAGGCTTCGCTGTGGTTAGACCAGGCTTCGAACCT-TTTTTCTTCCTC 119
Query 120 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTTTCATTGCTGAAGAAACAATG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTTTCATTGCTGAAGAAACAATG 179
Query 180 TGACCAGAATTCATCTCCGGCTACGAAGAAGGTTCTTTTCATTGAGACATTACCCAACAT 239
|| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CGATCAGAATTCATCTCCGGTTACGAAGAAGGTTCTTTTCATTGAGACATTACCGAACAT 239
Query 240 GGTTCAGTCAAAGATTCTATCTTTCCTTCGTTTAGAGTATCAGAGGTTTTGCGTTAGTGA 299
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 240 GGTTCAGTCAAAGATTCTATCTTTTCTTCTTTTCGAGTATCAGAGGTTTTGCGTTAGTGA 299
Query 300 TTTGGTTTGGCTGGCTAGAGAAATGTTGTGTGGTGGTGG-AAGTAAAGTAGTCGATTTCT 358
|||||||||||||||||||||||||||| || ||||||| || |||||| ||||||||||
Sbjct 300 TTTGGTTTGGCTGGCTAGAGAAATGTTGGGTAGTGGTGGTAA-TAAAGTTGTCGATTTCT 358
Query 359 GGGTTCAGAGAGATGCACAGAACCTGCTCGACAGAATTCCTAAACCAAAGTTTGATTGGA 418
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 359 GGGTTCAGAGAGATGCACATAACCTGCTCGACAGAATTCCTAAACCAAAATTTGAATGGA 418
Query 419 TATCTCATCTAGATATGGATTCAGCTGATGATGGCAGTATTG-GGGAGGAT-TTTGACTC 476
||||| |||||||| |||||||||||||||| | ||| | || | ||| | ||||||||
Sbjct 419 TATCTAATCTAGATTTGGATTCAGCTGATGAAGACAGCA-TGAAGCAGG-TATTTGACTC 476
Query 477 TGTACCTGATTGGCTAAGTGAGAAGGTTGGTTCTGCTGGTACAATTCTTCCATGGCTTCC 536
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 TGTACCTGATTGGCTCAGTGAGAAACTTGGTTCTGCTGGTACAATTCTTCCATGGCTTCC 536
Query 537 TGTATCATACGATGATTTAGATTCGGAAATGCTGGTTGTTGATTCTTGGAATGGGAAGGA 596
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TGTATCCTGTGATGATGTAGATTCAGAAATGCTGGTTGTTGATTCTTGGAATGGGAAGGA 596
Query 597 GATGACTCAAATCCAAGAGGATATGGAAGAAGATCAGAGAGAAGTTGTGGATAACATTGA 656
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 GATAACTCAAATCAAAGAGGATATGGAAGAAGATCAGAGAGAAGTTGTGCATAACATTGA 656
Query 657 TCATACCATGAATGTTGGGTTACAAGCTGATGATCATGAAATGGCGGTGAATCTTAGAGC 716
||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 657 TCATACCATGACTGTTGGGTTACAAGCTCATGATCATGAAATGGCTGTGAATCTTAGAGC 716
Query 717 TCAGGTTACGAACTCTGAGTCTACTTCTGAAGTTTTAACCTTGTGTAATGAAATTCGGAA 776
|||| || |||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 717 TCAGATTTCGAACTTTGAGTCTACTTCTGAAGTTTTAACCTTGTGTAACGACATTCGGAG 776
Query 777 ACTTTGCTTAGAGAAGGGTAGGGACTCTTTTAGAGTTTTGGCTTTGATTGAGCCTTGGAA 836
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 777 ACTTTGCTTGGAGAAGGGTAAGGACTCTTTGAGAGTTTTGGCTTTGATTGAGCCTTGGAA 836
Query 837 TGCAGATGATGAGACTGCTGCGGTTTTACTTTCTAATTTACAGAGTGGAAGTGAGGAAGA 896
||||||||||||||||||||| ||||||||||| | ||| || | |||||||||||||||
Sbjct 837 TGCAGATGATGAGACTGCTGCAGTTTTACTTTCGAGTTTGCATAATGGAAGTGAGGAAGA 896
Query 897 TGAGCTTGGTTGGCCAAGCCAGGTTCTATGTTCGATTGTGCTTCCAAAGTTTGTGTCTCT 956
|||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 897 AGAGCTTGGTTGGCCAAGCCATGTTCTATGTTCGATCGTGCTTCCAAAGTTTTTGTCTCT 956
Query 957 CGAGAAGTCCGCCTCTCGTGTGCTGATGTCTTCAACAATCGAGTTTTGCAAGATCCACCA 1016
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGAGAAGTCTGCCTCTCGTGTGCTGATGTCTTCAACAATCGAGTTTTGCAAGATCCACCA 1016
Query 1017 AAGAGCAGCTGAGTATGCATTGGTGTTCCCTTTGATACTCAGGAGAGAAGGGATAAACAA 1076
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1017 AAGAGCAGCTGAGTATGCATTGGTGTTCCCTTTAATACTCAGGAAAGAAGGGATAAACAA 1076
Query 1077 TTTCATTTGTGAGGTGATTTCAAGGGTGTTGAAAGAATGCTTGCACTTGGGTCAAATTTC 1136
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1077 TTTCATTTGTGAGGTGATTTCAAGGGTTTTGAAAGAGTGCTTGCACTTGGGTCAAATCTC 1136
Query 1137 TGGTTTTTGCCAGAAGTTACTTTGTGGAAGAACAGAAGAGCGGAGGTTTATGTTCCTTCC 1196
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 TGGTTTTTGCCAGAAGTTGCTTTGTGGAAGAACACAAGAGCGGAGGTTTATGTTCCTTCC 1196
Query 1197 CTGCCATCGAGAGCTCATATCGGATGAACTGACATGGAATGAATCTCTGTTTATCCTTTT 1256
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1197 CTGCCATCGAGATCTCATATCGGATGAACTGACATGGAATGAATATCTGTTTATCCTTTT 1256
Query 1257 CCAAAACATCTTGATCCATGACGTCCCTTTATCCCAAGACTCCGTTGATTGCCTTGTTTC 1316
||| ||||| |||||||||| | |||||||||||||||| ||||| ||||| ||||||||
Sbjct 1257 CCAGAACATATTGATCCATGGCATCCCTTTATCCCAAGATTCCGTCGATTGTCTTGTTTC 1316
Query 1317 TAAGGTTCAGGAGTTGGCGGAAAGGTATTCCAAATCGCTAAAATTTGGAAACTTCTTGCT 1376
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 CAAGGTTCAGGAGTTGGCGGAAAGGTATTCGAAATCGCTAAAATTTGGAAACTTCTTGCT 1376
Query 1377 ACATTTTACTGCCAAATTTGCTCCGATGCTACAGGCTCATAAGTATCAGCTGACCGAATC 1436
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1377 ACATTTTACTGCCAAATGTGCTCCGATGCTACAGGCTCATAAGTATCAGCTGATCGAATC 1436
Query 1437 AGTTAAGTGCACCAACAGTCTAGTTACAAAATCTATCCTATCGAAACTCAATGCCCTGTA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGTTAAGTGCACCAACAGTCTAGTTACAAAATCTATCCTATCGAAACTCAATGCCCTGTA 1496
Query 1497 GATCCTATAGCTCAAGTCTAGATAATTCCAACAATTCTCTGTGGTTTGACATCTGGAGCC 1556
|||||||||||||||||| || |||||| |||||| |||||||| |||||||||||||||
Sbjct 1497 GATCCTATAGCTCAAGTCCAGGTAATTCAAACAATCCTCTGTGGGTTGACATCTGGAGCC 1556
Query 1557 TTTGTCTTGTCTCCAAACTTGGTGGTTAAAGAATACTTGAGGTAAACTTGAAACTTGAAG 1616
|||||||||||||| |||||||||||| ||||| | || ||||||| ||||||||||
Sbjct 1557 TTTGTCTTGTCTCCGAACTTGGTGGTTTAAGAACAGTTAAGGTAAATTTGAAACTTG--- 1613
Query 1617 CCTCTGGGATACAAGAGCTTTGAAGCTGGAGATATAATTGCATCAGCAGCAAGATTTTAG 1676
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1614 CCTCTGGGATACAATAGCTTTGAAGCTGGAGAAATAATTGCATCAGCAGCAAGATTGTAG 1673
Query 1677 AACGTGGCTATTGA-CCACTGTAGTAAGTGGAGGTGTTCAGACCAAATTTAGTCAATAGA 1735
|| |||| |||||| || ||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 1674 AATGTGGATATTGATCC-CTGTAATAAGAGGAGTTGTTCAGACCAAATTTAGTCAATAGA 1732
Query 1736 GCAGAAGAATTTAGTTAATAGAGCAGCTCGACAAGTCCGCAACCGGACACTTAACTTCAA 1795
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1733 GCAGAAGAGTTTAGTTAATAGAGAAGCTCGACAAGTCCGCAACCGGACACTTAACTTCAA 1792
Query 1796 GAAAAAGGTGTTCCGGATGCCCATCTGTGGTTCTTCTTACCACGGCTCGGTGC-TCTTCG 1854
|||| | ||| | ||||||||||||| ||| || ||||||| | ||||||| | ||||||
Sbjct 1793 GAAACATGTGCTGCGGATGCCCATCTATGGGTCCTCTTACCTCAGCTCGGT-CATCTTCG 1851
Query 1855 GTCAGACCACAGTCCCTGAAACTGATGTAGAAGATTGCATTCCCGGTTGGCTTCATGGTT 1914
|||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| |
Sbjct 1852 GTCAGACCACAGTCCCTGAAGCTAATGTAGAAGATTGCATCCCCGGTTGGCTCCATGGCT 1911
Query 1915 TCACGAGTTTGTACAA---CGGCCTTCTTGATCTCCAGAGGCGTAGCAAACTTGAGCTTT 1971
||||||||||| |||| || ||||||||||||||||||| | ||||| ||||||||||
Sbjct 1912 TCACGAGTTTGAACAAGAACGACCTTCTTGATCTCCAGAGGTGCAGCAAGCTTGAGCTTT 1971
Query 1972 GTCTAGGAGACAAAAGACATA-TTAGGCAT 2000
|||| |||||||||||||| | ||||||||
Sbjct 1972 GTCTTGGAGACAAAAGACA-AGTTAGGCAT 2000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5