BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491805
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29530.1 | Symbols: | Pyridoxal phosphate phosphatase-relat... 1194 0.0
> AT4G29530.1 | Symbols: | Pyridoxal phosphate phosphatase-related
protein | chr4:14496079-14497454 FORWARD LENGTH=967
Length=967
Score = 1194 bits (646), Expect = 0.0
Identities = 716/749 (96%), Gaps = 8/749 (1%)
Strand=Plus/Plus
Query 1 AAATGGCAAAGATCGTGATTA-TATTTGATTTCGATCGGACTTTAATCGACGGAGATAGT 59
|||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 84 AAATGGCAAAAATCGTGA-TATTATTTGATTTCGATCGGACTTTGATCGACGGAGATAGT 142
Query 60 GACAGA-TGGGTGGTCACTGAAATGGGACTCACAGAGATTTTCCATCAGCTCCGTTTCAC 118
|||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 143 GACA-ATTGGGTTGTCACTGAAATGGGACTCACAGAGATCTTCCATCAGCTCCGTTTCAC 201
Query 119 TTTACCATGGAATCGTCTTATGGATAGGATGATGATGGAGATACAGTCACAAGGTAGATC 178
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 202 TTTACCATGGAATCGTCTTATGGATAGGATGATGATGGAGCTACAATCACAAGGTAGATC 261
Query 179 GATTGATGACATTGAATCTTGCTTGAAGAATATGCCTATTGATTCTCATATTATTGAAGC 238
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 262 GATTGATGACATTAAATCTTGTTTGAAGAAAATGCCTATTGATTCTCATATTATTGAAGC 321
Query 239 TATCAAATCTA-CCAAATC-TCTAGGATGTGATTTAAAGATTGTGAGTGATGCAAATCAG 296
||||||||| | | ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 322 TATCAAATC-AGCTAAATCTTC-AGGATGTGATTTAAAGATTGTGAGTGATGCAAATCAG 379
Query 297 TTTTACATTGAGAAGATACTAGAGCAGCATGATTTGTTGGATTGCTTTTCTGAGATTTAC 356
|||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 380 TTTTTCATTGAGAAGATACTAGAGCACCATGATTTGGTGGATTGCTTTTCTGAGATTTAC 439
Query 357 ACTAATCCAACCTCTCTTGATGAAAATGGGAACTTGCGGATCTTGCCTTATCATAGTGAT 416
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 440 ACAAATCCAACCTCTCTTGATGATAATGGGAACTTGCGGATCTTGCCTTATCATAGTGAT 499
Query 417 GCATTGCCTCCACATAGCTGCAATCTCTGCCCTTCAAATCTATGCAAGGGTCTAGTGATG 476
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 500 GCATTGCCTCCACATAGCTGCAATCTTTGCCCTTCAAATCTATGCAAGGGTTTAGTAATG 559
Query 477 GATCATATACGTGCTTCTTCTTCCAATGATCAAATTCCAAGAAGGTTTATCTACCTTGGA 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GATCATTTACGTGCTTCTTCTTCCAATGATCAAATTCCAAGAAGGTTTATCTACCTTGGA 619
Query 537 GATGGAGGAGGTGACTTCTGCCCGACATTGAAGCTGAGAGAGTGTGATTTTGTGATGCCG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GATGGAGGAGGTGACTTCTGCCCGACATTGAAGCTGAGAGAGTGTGATTTTGTGATGCCG 679
Query 597 AGAACGAATTATCCGCTATGGAAGAAGATTTCAGACAATGCCTTACTGATCAAAGCAGAA 656
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 680 AGAACGAATTATCCGCTATGGAAGAAGATCTCAGACAATCCCTTACTGATCAAAGCAGAA 739
Query 657 GTCAAGGAATGGAGCAGTGCAGAGGAACTACAGAGAATCCTTCTGCAACTTGTCAGCACA 716
|||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 740 GTCAAGGAATGGAGTAGTGCAGAGGAACAACAGAGAATCCTGCTGCAACTTGTCAGCACA 799
Query 717 ATAACTAAAGAAGAAGATTCATAACACAA 745
||||| |||||||||||||||||||||||
Sbjct 800 ATAACAAAAGAAGAAGATTCATAACACAA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5