BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491806
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29520.1 | Symbols: | LOCATED IN: endoplasmic reticulum, pl... 1676 0.0
> AT4G29520.1 | Symbols: | LOCATED IN: endoplasmic reticulum,
plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saposin
B (InterPro:IPR008139); Has 137 Blast hits to 137 proteins
in 50 species: Archae - 2; Bacteria - 0; Metazoa - 41; Fungi
- 10; Plants - 36; Viruses - 0; Other Eukaryotes - 48 (source:
NCBI BLink). | chr4:14493911-14495745 REVERSE LENGTH=1154
Length=1154
Score = 1676 bits (907), Expect = 0.0
Identities = 998/1041 (96%), Gaps = 9/1041 (1%)
Strand=Plus/Plus
Query 44 GCTTCTGACTTCAATGGTTGTGATGAATCGAGTTCTGATAGCTCTTACATTAGCTCTTCT 103
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 76 GCTTCTGACTTCAATGGTTGTGATGAATCGAGTTCTGGTAGCTCTTACATTAGCTCTGCT 135
Query 104 AGCTTCGTCGGCGTTATTACCGGTTTCCGATGGTGCGAAGAAACCGTCTTCGGCGCCGAG 163
||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||
Sbjct 136 AGCTTCGTCGGCGTTATTACCTGTTTCCGATGCCGCGAAGAAACCTTCTTCGACGCCGAG 195
Query 164 AAAGGAGGATGTTCCGTATATAAAGTGTCAGGTTTGCGAGAAACTAGCCTCTCGGTTACA 223
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 196 AAAGGAGGATGTTCCGTATATAAAGTGTCAGGTTTGCGAGAAACTATCTTCTCGGTTACA 255
Query 224 CCAGCTAGTGAAGGAGAAGCAACAACAGATCTCTCCCAAGAAGATCTCGGAGTATGAGAT 283
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 256 CCAGCTAGTGAAGGAGAAGCAACAACAGATCTCTCCCAAAAAGATCTCGGAGTATGAGAT 315
Query 284 CATTGAGATTGCTGAAAATGTCTGCAATTTGAAGAAAGAGGAAGCTGATTGGATGCTAAA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 316 CATTGAGATTGCTGAAAATGTCTGCAATTTGAAGAAAGAGGAAGCTGATTGGATGCTTAA 375
Query 344 GATTGACATTGTTGAAAAAGGCGATAAGCTTGTGCTGGTTGAGCAAGC-AGAAGAAGGGA 402
||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 376 GATTGACATTGTTGAGAAAGGCGATAATCTTGTGCTGGTTGAGCAA-CAAGAAGAAGGGA 434
Query 403 TGTGTAATTCCAAGTGCAAGACGATCGAGAATGCTTGTCAAAAGGTCATTGGTTACTCAG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGTGTAATTCCAAGTGCAAGACGATCGAGAATGCTTGTCAAAAGGTCATTGGTTACTCAG 494
Query 463 ACACTGATGTTTCAGAGTATATTTACAAGTCTAAGCCTGATCTTGTTTCCCTGGTGAATC 522
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 495 ACACTGATGTTGCAGAGTATATTTACAAGTCTAAGCCTGATCTTGTTTCACTGGTGAATC 554
Query 523 ATCTATGCAATGACCTGACCGATGCTTGTAGCAAGAAACCTCCTCCTGTTCCTAAGGATC 582
|||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 555 ATCTATGCAAAGATTTGACCGATGCTTGCAGCAAGAAACCTCCTCCTGTTCCCAAGGATC 614
Query 583 GGGTTCCTGGAGAACCATTTGTTGCAAAACCATCAAAAGATGCTGAAATGGACAAGATTT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGGTTCCTGGAGAACCATTTGTTGCAAAACCATCAAAAGATGCTGAAATGGACAAGATTT 674
Query 643 TGAGATCTATGCAGGGTATGCCAGGAGCACCTGGCATGAAGGTATACTCTAGAGAAGATA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TGAGATCTATGCAGGGTATGCCAGGAGCACCTGGCATGAAGGTATACTCTAGAGAAGATA 734
Query 703 TAGAGAAGGGGAATATCGGTAATGAAGATGACGATGGCGACGATGATGAAGATGAGGAAG 762
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 735 TAGAGAAGGGGAATATCGGTAATGAAGATGATGATGGCGACGATGATGAAGATGAGGAAG 794
Query 763 AAGATGAAAAGTTTCCCAAGAACTTGGGAAAAGTTTTGAAAGAGAAAGAGAGTAAAACGG 822
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 795 AAGATGATAAGTTTCCCAAGAACTTGGGAAAAGTTTTGAAAGAGAAAGAGAGTAAAACAG 854
Query 823 AAGAATTGAAGAAGACAATCACTAAGGAGTTCAAGAAGAAAGGTGAGGTTTTGAAGAGAC 882
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 855 AAGAATTGAAGAAGACAATCACTAAGGAGTTCAAGAAGAAAGGTGAGGCTCTGAAGAGAC 914
Query 883 ATGCACAGAAAGTGTCGAACCGGGTCCGGAGATGGTGGAAAGGACTTAGAACGTCTTCTT 942
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 915 ATGCACAGAAAGTGTCAAACCGGGTCCGGAGATGGTGGAAAGGACTTGGATCGTCTTCTT 974
Query 943 CTTCAAAGAAACCTAAGTCCGGGAAGTCTGAGCTATAGAAACAGTTTCAAACTGGTTTTG 1002
| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 975 C---AAAGAAACCTAAATCCGGAAAGTCTGAGCTATAGAAACAGTTTTAAACTGGTTTTG 1031
Query 1003 TTTTAATGTACTACTCTTCTTCACACTGGCTTTTTGTAGATTTCGGTTAGTTTCTATAAT 1062
||| |||||||| || ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1032 TTT-AATGTACT-CT-TTCTTCACACTTGCTTTTTGTAGATTTCCTTTAGTTTCTATAAT 1088
Query 1063 CTTT-GGAGAGAATATTGAAA 1082
|||| ||||||||||||||||
Sbjct 1089 CTTTTGGAGAGAATATTGAAA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5