BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491808
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29490.1 | Symbols: | Metallopeptidase M24 family protein |... 2501 0.0
> AT4G29490.1 | Symbols: | Metallopeptidase M24 family protein
| chr4:14487894-14491525 FORWARD LENGTH=1714
Length=1714
Score = 2501 bits (1354), Expect = 0.0
Identities = 1582/1690 (94%), Gaps = 24/1690 (1%)
Strand=Plus/Plus
Query 1 TTTATTATTAGGCCTCGCCGG-aaaa-aaaaaaC-ACCCCAATCATCGTCATGTCGTCTC 57
||||||||||||||| ||||| |||| ||||||| | | | ||| |||||||||||||||
Sbjct 1 TTTATTATTAGGCCTTGCCGGAAAAACAAAAAACTAGCTC-ATCGTCGTCATGTCGTCTC 59
Query 58 TGTCTCCTCCACCGATTCCTATGGAGCTCCACGCCGGTAACCGGCAAAAGCTCCTTGATT 117
||||||||||||||||||| ||||| |||||||||||||||||| ||||| | || || |
Sbjct 60 TGTCTCCTCCACCGATTCCAATGGAACTCCACGCCGGTAACCGGAAAAAGTTACTAGAAT 119
Query 118 CAATACGCCGTCACTTATCTAATTCCAATTGTTCTCTAGATGGATTCGTTTTTCTACAGG 177
||||||||||||| ||||||| ||||||| ||||||| |||||||| ||| |||||||||
Sbjct 120 CAATACGCCGTCAGTTATCTAGTTCCAATCGTTCTCTCGATGGATTTGTTCTTCTACAGG 179
Query 178 GTGGTGAGGAGAAAAATCGATACTGCACTGATCACACCGAGCTCTTCAGGCAGGAGAGTT 237
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 180 GTGGCGAGGAGAAAAATCGATACTGTACTGATCACACCGAGCTCTTCAGGCAAGAGAGTT 239
Query 238 ATTTTGCTTACTTGTTTGGTGTCAGAGAGCCTGATTTTTATGGAGCTATTGACGTTGGAA 297
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 240 ATTTTGCTTACTTGTTTGGAGTCAGAGAGCCAGATTTCTATGGAGCTATTGACATTGGAA 299
Query 298 GTGGGAAATCTATCCTTTTTATTCCAAGGTTGCCTGTTGATTATGCTGTCTGGTTAGGG- 356
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 300 GTGGGAAATCTATCCTTTTTATTCCAAGGTTGCCTGATGATTATGCTGTTTGGTT-GGGA 358
Query 357 GAGATAAAGCCGTTGTCGCATTTTAAGGAAACATATATGGTTGACATGGTTTTCTATGTG 416
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGATTAAGCCATTGTCGCATTTTAAGGAAACATATATGGTTGACATGGTTTTCTATGTG 418
Query 417 GATGAGATTATTCAAGTCTTTAATGAACAATTTAAGGGATCTGGAAAGCCTCTGTTGTAT 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 GATGAGATTATTCAAGTCTTTAATGAACAATTTAAGGGATCTGGAAAGCCCCTGTTGTAT 478
Query 477 CTCTTGCATGGTCTTAACACCGACAGCAGTAACTTCTCAAAACCTGCCAGCTTTGAGGGG 536
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCTTGCATGGTCTTAATACTGACAGCAGTAACTTCTCAAAACCTGCCAGCTTTGAGGGG 538
Query 537 ATAGAAAAGTTTGAGACTGATTTGACTACTTTACATCCTATATTGGCGGAATGTCGAGTT 596
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 ATAGACAAGTTTGAGACTGATTTGACTACTTTACATCCTATTTTGGCGGAATGTCGAGTT 598
Query 597 ATTAAATCAAGTTTGGAGCTTCAAGTAATACAGTTTGCAAATGATATCAGTTCTGAAGCT 656
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 599 ATTAAATCAAGTTTGGAGCTTCAACTAATACAGTTTGCAAATGATATAAGTTCTGAAGCT 658
Query 657 CATATAGAGGTTATGAGGAGAGTCACACCTGGCATGAAGGAATATCAGATGGAAAGTATG 716
||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 659 CATATAGAGGTTATGAGGAAAGTCACACCGGGCATGAAAGAATATCAGATGGAAAGTATG 718
Query 717 TTTATGCATCACAGCTACATGTACGGTGGCTGTAGGCATTGCTCATACACATGTATTTGT 776
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 719 TTTTTGCATCACAGCTACATGTACGGTGGCTGTAGGCATTGCTCGTACACATGCATTTGT 778
Query 777 GCAACAGGGGATAACAGTGCTGTTCTTCATTATGGGCATGCTGCGGCTCCAAATGATAGG 836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCAACAGGGGATAATAGTGCTGTTCTTCATTATGGGCATGCTGCGGCTCCAAATGATAGG 838
Query 837 ACTTTCGAAGACGGAGATTTGGCATTGCTTGATATGGGTGCTGAATACCATTTTTATGGG 896
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACTTTTGAAGATGGAGATTTGGCATTGCTTGATATGGGTGCTGAATACCATTTTTATGGG 898
Query 897 TCTGACATAACCTGCTCATTCCCCGTCAATGGTAAATTTACTAGCGACCAGAGTCTAATC 956
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 899 TCTGACATAACATGCTCATTCCCCGTCAATGGTAAATTTACAAGTGACCAGAGTCTAATC 958
Query 957 TACAATGCTGTTCTGGATGCTCATAATTCTGTAATCTCTGCGATGAAACCAGGAGTAAAC 1016
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 959 TACAATGCTGTTCTGGATGCACATAATTCTGTAATCTCTGCGATGAAGCCAGGAGTAAAC 1018
Query 1017 TGGGTGGATATGCACAAGTTAGCCGAAAAAATCATCATTGAGTCACTGAAGAAGGGGTCC 1076
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1019 TGGGTGGATATGCACAAGTTAGCTGAAAAAATCATCCTTGAGTCACTGAAGAAGGGGTCC 1078
Query 1077 ATCCTCACTGGTGATGTGGACGACATGATGGTACAACGCTTAGGTGCTGTTTTCATGCCT 1136
|| |||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1079 ATACTCACTGGTGATGTAGATGACATGATGGTACAGCGCTTGGGTGCTGTTTTCATGCCT 1138
Query 1137 CATGGACTAGGTCACTTCATGGGCATTGACACACATGATACCGGTGGTTACCCAAAGGGA 1196
|||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||
Sbjct 1139 CATGGACTAGGTCACTTCATGGGCATCGACACTCACGATACTGGTGGCTACCCAAAGGGA 1198
Query 1197 GTGGAGAGACCAAAGGAACCTGGATTGAAGTCATTACGCACAGCAAGAGACCTTCTTGAA 1256
||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1199 GTGGAGAGACCAAAGAAACCTGGATTGAAGTCATTACGAACTGCAAGAGACCTACTTGAA 1258
Query 1257 GGAATGGTAATAACGGTGGAACCAGGATGCTATTTCATCAAGGCATTGCTATTCCCAGCC 1316
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 GGAATGGTAATAACGGTGGAACCAGGATGCTATTTCATCAAGGCATTGCTGTTCCCAGCC 1318
Query 1317 ATGGAAAACGAAACAACCTCTAAGTTCTTCAACCGTGAAACAATAGAGAGATTCAGAAAC 1376
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATGGCAAACGCAACAACCTCTAAGTTCTTCAACCGTGAAACAATAGAGAGATTCAGAAAT 1378
Query 1377 TTCGGAGGTGTCAGAATCGAAAGTGATTTGGTCGTTACTGCGAATGGCTGCAAGAACATG 1436
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1379 TTCGGAGGTGTCAGAATCGAAAGCGATTTGGTCGTTACTGCTAATGGCTGCAAGAACATG 1438
Query 1437 ACGAATGTTCCGCGAAAGACATGGGAGATCGAAGCTGTGATGGCTGGAGGGCCTTGGCCA 1496
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ACGAATGTTCCACGAGAGACATGGGAGATCGAAGCTGTGATGGCTGGAGGGCCTTGGCCA 1498
Query 1497 CCGAGCAAGTGATCATAACTACTCTTAG-C--CT-ATGGAAATTAAAAACTTGATAAG-A 1551
|||| ||||||||| || |||||||||| | || ||||||||||||||||||||||| |
Sbjct 1499 CCGACCAAGTGATCGTAGCTACTCTTAGGCAGCTTATGGAAATTAAAAACTTGATAAGTA 1558
Query 1552 GAAACTCAATAATAATACAACCTTTGT----GTTAATTGGAATAAG-AACTATTGCCTGT 1606
||||||||||||| |||||||| | |||||| |||||||| || |||||||||
Sbjct 1559 -AAACTCAATAATA---CAACCTTTATTTTTGTTAATGGGAATAAGGAAAAATTGCCTGT 1614
Query 1607 GTTTTACTAATCTAGTACTACTGTACATGTTGTTTTGTTTCAGTGTCTTGTTTGTGTGGT 1666
||||||||||||| |||| | |||| | || ||||||||||||||||||||||||||||
Sbjct 1615 GTTTTACTAATCTTGTAC-A-TGTAG-T-TTATTTTGTTTCAGTGTCTTGTTTGTGTGGT 1670
Query 1667 CGGATATTAA 1676
|||||||||
Sbjct 1671 TGGATATTAA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82830899250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5