BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491809
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29480.1 | Symbols: | Mitochondrial ATP synthase subunit G ... 887 0.0
> AT4G29480.1 | Symbols: | Mitochondrial ATP synthase subunit
G protein | chr4:14486041-14487777 REVERSE LENGTH=725
Length=725
Score = 887 bits (480), Expect = 0.0
Identities = 548/579 (95%), Gaps = 12/579 (2%)
Strand=Plus/Plus
Query 3 TAACATAAAGAAGAGAAGTGACATATTTACGCA---GTTGTTGAATCAGTGGCCCGAAAT 59
||||||||||||||||| | || ||||||| ||||||||| ||||||||||||||
Sbjct 8 TAACATAAAGAAGAGAA--G---TA-TTACGCAGTTGTTGTTGAACCAGTGGCCCGAAAT 61
Query 60 CTCGAATCGACTCATCTCTCAGCTCACCGGCGCTGCATTATC--AATTGCAGGAAGGATT 117
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 62 CTCGAATCGACTCATCTCTCAGCTCACCGGTGCTGCATTATCAAAACTGCAGGAAGGATT 121
Query 118 TGGTTGTGAAGATGGCATCGAAGTTGATACAAGTTCAGTCAAAGGCATGTGAGGCTTCAA 177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 122 TGGTTGTGAAGATGGCATCGAAGTTGATACAAGTTCAATCAAAGGCATGTGAGGCTTCAA 181
Query 178 AGTTTGTGGCTAAGCATGGAACTTCCTACTACAGACAATTGCTGGAGAAGAACAAGCAAT 237
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 182 AGTTTGTGGCTAAGCATGGAACTTCCTACTACAGACAGCTGTTGGAGAAGAACAAGCAGT 241
Query 238 ATATCCAGGAACCTGCCACTGTTGAGAAGTGTCAAGAGTTGTCTAAGCAATTGCTCTACA 297
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 242 ATATCCAGGAACCTGCCACTGTTGAGAAGTGCCAAGAGTTGTCTAAGCAGTTGCTCTACA 301
Query 298 CCCGTCTTGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAATAGACTACGCAA 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 302 CCCGTCTTGCTAGCATTCCCGGACGCTATGAAACCTTCTGGAAGGAAGTAGACTACGCAA 361
Query 358 AGAACTTATGGAAGAACAGATCCGCTCTGAAGGTAGAAGATGCGGGAATCGCTGCATTGT 417
||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 362 AGAACCTATGGAAGAACAGATCCGGTCTGAAGGTAGAAGATGCAGGAATCGCTGCATTGT 421
Query 418 TTGGTCTTGAATGCTTTGCGTGGTATTGCGCGGGTGAAATCGCCGGCAGAGGATTCACCT 477
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 422 TTGGTCTCGAATGCTTTGCATGGTATTGCGCAGGTGAAATCGCCGGCAGAGGATTCACCT 481
Query 478 TCACAGGCTATTACCCTTGAAGGAGAGAAACAATAACTTGAAGATTGTGTAATCCCCTCC 537
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 482 TCACAGGCTATTACCCATGAAGGAGAGTAACAATAACTTGAAGATTGTGTAATCCCCTCC 541
Query 538 GTTTT-AGTTTTCATGATTCTCTCTTGAATCAATTTTTT 575
||||| |||||||||||||||||||||||||||||||||
Sbjct 542 GTTTTTAGTTTTCATGATTCTCTCTTGAATCAATTTTTT 580
Score = 182 bits (98), Expect = 5e-45
Identities = 102/104 (98%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 576 AAAATCCATTTTGCTATAACTCTTTGATAAAGATTGCTCTCAATAAGAACAAAATTTCCC 635
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 620 AAAATCCATTTTGCTATAACTCTTTGATAAAGGTTGCTCTCAATAAGAACAAAATTTCCC 679
Query 636 AGGAAATTGCTTTCACTATAATGTTTTTGGCCTTGTTTAATATC 679
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 680 AGGAAATTGCTTTCACTATAATGTTTTTGTCCTTGTTTAATATC 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5