BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491810
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29470.1 | Symbols: | Phospholipase A2 family protein | chr... 1175 0.0
AT4G29460.1 | Symbols: | Phospholipase A2 family protein | chr... 577 7e-164
> AT4G29470.1 | Symbols: | Phospholipase A2 family protein | chr4:14484339-14485817
REVERSE LENGTH=931
Length=931
Score = 1175 bits (636), Expect = 0.0
Identities = 765/827 (93%), Gaps = 10/827 (1%)
Strand=Plus/Plus
Query 1 AGAATGGGACCTTCCATTCCAAAAAGACTCAATTATACTT-TT-TGGTCAGAATTTGAAA 58
||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||
Sbjct 1 AGAATGGGACCTTCCATTCCAAAGAGACACAATTATAATTCTTGGGGTCAGAATTTGAAA 60
Query 59 GAACAAAACAAGAAACTTCCACTAGAGAAGGTGAGATACAAAGATGATTTGCGGTGGTGC 118
||||||||||| ||||||| ||| |||||||| ||||| ||| ||||| ||||||||||
Sbjct 61 GAACAAAACAACAAACTTCTACTGGAGAAGGTAAGATAGAAACATGATCCGCGGTGGTGC 120
Query 119 TTTGACACATGTTGCTTTAGGTTTAACCGCCTTCCTCCT-CTTCGCCGTTGTTCACAGCC 177
||||||||||||||||||||| ||||||| ||||||||| ||| ||||| ||||||||||
Sbjct 121 TTTGACACATGTTGCTTTAGGCTTAACCGTCTTCCTCCTCCTT-GCCGTCGTTCACAGCC 179
Query 178 AGGAGAAGTGCAGCAGAACCTGCATTGCACAGAAATGCAATGTTCTCAGCGTTCGATATG 237
|||| |||||||||| ||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 180 AGGAAAAGTGCAGCAAAACCTGCATTGCACAGAAATGCAATGTTCTCGGTATTCGCTATG 239
Query 238 GGAAGTATTGTGGGATAGGTTACTTTGGATGTCCGGGAGAGCCACCTTGTGATGATCTTG 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 GGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGGAGAGCCACCTTGTGATGATCTTG 299
Query 298 AT-ACTTGTTGTATGAAC-CATGACAATTGTGTTGGTGTAAAAGGTATGACTTATGTTAA 355
|| | |||||||||| || ||||| |||||||||| | |||||||||||||||||||| |
Sbjct 300 ATGA-TTGTTGTATG-ACTCATGATAATTGTGTTGATTTAAAAGGTATGACTTATGTTGA 357
Query 356 CTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTaaaaaaaTCAATCCAACAATCTAA 415
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 358 CTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTTAAACAATCAATCCAAGAATCTAA 417
Query 416 CAACCAAAAGGTTGGATTTTCCAAGCAATGCCCTTATTCAACAGTGATACCAACCGTGTA 475
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 CAACCAAAAGGTTGGATTTTCCAAGGAATGCCCTTATTCAACAGTGATACCAACCGTGTA 477
Query 476 CAGAGGAATGAATTACGGCATTTTCTTCAGTGGGATAGGTAATATCATTAAACCTAAGAA 535
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 CAGAGGAATGAATTATGGCATTTTCTTCAGTGGGATAGGTAATATCATTATACCTAAGAA 537
Query 536 GCCAGCAAGCGCCGCGCCCGTAGTGGAGGTGGATCTAGCTCGGAGTAAAGCAGACACAAA 595
||||||||| |||| ||| || |||||||||||||| || ||||||||||| ||||||||
Sbjct 538 GCCAGCAAGTGCCGGGCCTGTCGTGGAGGTGGATCTGGCACGGAGTAAAGCGGACACAAA 597
Query 596 AGATGGCCTTGGAAAAAATCAAGGACCTCAAACAAAAGATGGCTCCAAAGTCTCTGTTTT 655
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 AGATGGCCTTGGAACAAATCAAGGCCCTCAAACAAAAGATGGCTCCAAAGTCTCTGTTCC 657
Query 656 GATGAACCCTTCTCCTTCTTGATCATTAGGTGACTCATAACTCTCAAGTTTTGTAGATTC 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GATGAACCCTTCTCCTTCTTGATCATTAGGTGACTCATAACTCTCAAGTTTTGTAGATTA 717
Query 716 TTTAACTTTGtttttttCATGAAAAATGATCAAGATCTTGAATTCTGTCAGGTTCATGGC 775
|||||||||||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct 718 TTTAACTTTGTTGTCTT-ATGAAAAATGATCAAGATCTTGAATTCTCTCAGGTTCATGA- 775
Query 776 TTCCCATGTATTATATACATTACTTTAGTTTCTATTGTACTCTAGAT 822
|||||||||||| |||||||||| ||||||||| || ||||||||||
Sbjct 776 TTCCCATGTATTTTATACATTACATTAGTTTCTCTTTTACTCTAGAT 822
> AT4G29460.1 | Symbols: | Phospholipase A2 family protein | chr4:14482875-14483936
REVERSE LENGTH=761
Length=761
Score = 577 bits (312), Expect = 7e-164
Identities = 472/546 (86%), Gaps = 23/546 (4%)
Strand=Plus/Plus
Query 116 TGCTTTGACACATGTTGCTTTAGGTTTAACCGCCTTCCTCCTCTTCGCCGTTGTTCA-CA 174
||||||| ||| ||||||||| ||||||||||||||||||||| ||||||| ||| | ||
Sbjct 21 TGCTTTGTCACGTGTTGCTTTCGGTTTAACCGCCTTCCTCCTCCTCGCCGTCGTT-AGCA 79
Query 175 GCCAGGAGAAGTGCAGCAGA-ACCTGCATTGCACAGAAATGCAA-TGTTCTCAGCGTTCG 232
|||||||||||||||||| | ||||||||||||||||| ||||| | ||| | ||||
Sbjct 80 GCCAGGAGAAGTGCAGCA-ACACCTGCATTGCACAGAACTGCAACAG-TCTTGGTATTCG 137
Query 233 ATATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCGGGAGAGCCACCTTGTGATGA 292
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 138 CTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGGAGAGCCACCTTGTGATGA 197
Query 293 TCTTGATACTTGTTGTATGAAC-CATGACAATTGTGTTGGTGTAAAAGGTATGACTTATG 351
||||||| |||||||||||| | |||||||||||||||| | |||||||||||||||| |
Sbjct 198 TCTTGATGCTTGTTGTATGA-CTCATGACAATTGTGTTGATTTAAAAGGTATGACTTACG 256
Query 352 TTAACTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTaaaaaaaTCAATCCAACAAT 411
|||||||||||||||||||| | |||||||||||| |||||| ||||| || |||| |
Sbjct 257 TTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAGCAAATCTATTAAACACT 316
Query 412 CTAACA-ACCAAAAGGTTGGATTTTCCA-AGCAATGCCCTTATTCAACAGTGATACCAAC 469
||||| | ||||| ||||||| |||| | |||||||||||||| | ||||||||||||
Sbjct 317 CTAACGGAG-AAAAGATTGGATTCTCCACA-CAATGCCCTTATTCGATAGTGATACCAAC 374
Query 470 CGTGTACAGA-GGAATGAATTACGGCATTTTCTTCAGTGGGATAGGTAATATCATTAAA- 527
||||| || | |||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 375 CGTGTTCA-ATGGAATGGATTACGGCATTTTCTTCAGTGGGATAGGTAATAT-ATTTAAT 432
Query 528 CCTAAGAAGCCAGCAAGCGCCGCGCCCGTAGTGGAGGTGGATCTAGCTCGGAGTAAAGCA 587
|| | || | ||||| || || || |||||||||||||| |||||||||||||
Sbjct 433 CCCCCGGTGCTGGGAAGCGT-GC-CC-GTCGTGGAGGTGGATCTCGCTCGGAGTAAAGTG 489
Query 588 GACACAAAAGATGGCCTTGGAA-AAAATCAAGGACCT-CAAACAAAAGATGGCTCCAAAG 645
|||||||| ||||||||||||| |||| | ||| ||| ||||||||||| ||||||||||
Sbjct 490 GACACAAAGGATGGCCTTGGAACAAAA-CTAGG-CCTTCAAACAAAAGAAGGCTCCAAAG 547
Query 646 TCTCTG 651
||||||
Sbjct 548 TCTCTG 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5