BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491811
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29460.1 | Symbols: | Phospholipase A2 family protein | chr... 904 0.0
AT4G29470.1 | Symbols: | Phospholipase A2 family protein | chr... 566 1e-160
AT2G19690.2 | Symbols: PLA2-BETA | phospholipase A2-beta | chr2... 189 3e-47
> AT4G29460.1 | Symbols: | Phospholipase A2 family protein | chr4:14482875-14483936
REVERSE LENGTH=761
Length=761
Score = 904 bits (489), Expect = 0.0
Identities = 549/578 (95%), Gaps = 4/578 (1%)
Strand=Plus/Plus
Query 1 AGAAAGATGATC-CCCGGCGTTGCTTTGACACGTGTTGCTTTCGGGTTAACCGCCTTCCT 59
|||||||||||| || ||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 AGAAAGATGATCACCGGGC-TTGCTTTGTCACGTGTTGCTTTCGGTTTAACCGCCTTCCT 59
Query 60 CCTCCTCGCCGCCGTGAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACAAAACTG 119
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 CCTCCTCGCCGTCGTTAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACAGAACTG 119
Query 120 CAACAGTCTTGGCATTCACTATGGGAAGTACTGTGGGATAGGTTACTTTGGATGTCGAGG 179
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 120 CAACAGTCTTGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCTGG 179
Query 180 AGAACCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGATTT 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAGCCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGATTT 239
Query 240 AAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAG 299
Query 300 AAAATCGATTAAACGA-TCTAACGGTCAAAAGATTGGATTCTCCACTCAATGCCCTTATT 358
||||| ||||||| | |||||||| ||||||||||||||||||| |||||||||||||
Sbjct 300 CAAATCTATTAAAC-ACTCTAACGGAGAAAAGATTGGATTCTCCACACAATGCCCTTATT 358
Query 359 CGATAGTGATACCAACCGTGTTCAATGGAATGGATTACGGCATTTTCTTCAGTGGGATAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGATAGTGATACCAACCGTGTTCAATGGAATGGATTACGGCATTTTCTTCAGTGGGATAG 418
Query 419 GTAATATATTCAAACCTCCGGTGCTGGGAAGTGTGCCCGTCGTGGAGGTGGATCTCTCTC 478
|||||||||| || || |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 419 GTAATATATTTAATCCCCCGGTGCTGGGAAGCGTGCCCGTCGTGGAGGTGGATCTCGCTC 478
Query 479 GGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAGCTAGGCCTTGGAACAAAAGAAG 538
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 479 GGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAACTAGGCCTTCAAACAAAAGAAG 538
Query 539 GCTCCAAAGTCTCTGCTTCTTTAAATATATGAGCCCTT 576
||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCTCCAAAGTCTCTGCTTCTTTAAATATATGAGCCCTT 576
> AT4G29470.1 | Symbols: | Phospholipase A2 family protein | chr4:14484339-14485817
REVERSE LENGTH=931
Length=931
Score = 566 bits (306), Expect = 1e-160
Identities = 483/567 (85%), Gaps = 18/567 (3%)
Strand=Plus/Plus
Query 1 AGAAAGATGATCCCCGGCGTTGCTTTGACACGTGTTGCTTTCGGGTTAACCGCCTTCCTC 60
||||| ||||||| ||| | ||||||||||| ||||||||| || ||||||| |||||||
Sbjct 98 AGAAACATGATCCGCGGTGGTGCTTTGACACATGTTGCTTTAGGCTTAACCGTCTTCCTC 157
Query 61 CTCCTCGCCGCCG-TGAGCAGCCAGGAGAAGTGCAGCAACACCTGCATTGCACA-AAACT 118
||||| |||| || | | ||||||||| ||||||||||| |||||||||||||| ||| |
Sbjct 158 CTCCTTGCCGTCGTTCA-CAGCCAGGAAAAGTGCAGCAAAACCTGCATTGCACAGAAA-T 215
Query 119 GCAACAG-TCTTGGCATTCACTATGGGAAGTACTGTGGGATAGGTTACTTTGGATGTCGA 177
|||| | ||| || |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 216 GCAA-TGTTCTCGGTATTCGCTATGGGAAGTATTGTGGGATAGGTTACTTTGGATGTCCT 274
Query 178 GGAGAACCACCTTGTGATGATCTTGATGCTTGTTGTATGACTCATGACAATTGTGTTGAT 237
||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 275 GGAGAGCCACCTTGTGATGATCTTGATGATTGTTGTATGACTCATGATAATTGTGTTGAT 334
Query 238 TTAAAAGGTATGACTTACGTTAACTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTA 297
||||||||||||||||| ||| ||||||||||||||||| | |||||||||||| ||||
Sbjct 335 TTAAAAGGTATGACTTATGTTGACTGCCACAAGCAGTTCCAGCGTTGCGTAAACGAGCTT 394
Query 298 AGAA-AATCGATTAAACGA-TCTAACGGTCAAAAGATTGGATTCTCCACTCAATGCCCTT 355
| || |||| || || || |||||| |||||| ||||||| |||| |||||||||
Sbjct 395 A-AACAATCAATCCAA-GAATCTAACAACCAAAAGGTTGGATTTTCCAAGGAATGCCCTT 452
Query 356 ATTCGATAGTGATACCAACCGTGTTCA-ATGGAATGGATTACGGCATTTTCTTCAGTGGG 414
|||| | ||||||||||||||||| || | |||||| |||| ||||||||||||||||||
Sbjct 453 ATTCAACAGTGATACCAACCGTGTACAGA-GGAATGAATTATGGCATTTTCTTCAGTGGG 511
Query 415 ATAGGTAATAT-ATTCAAACCTCCGGTGCTGGGAAGTGT-GC-CC-GTCGTGGAGGTGGA 470
||||||||||| ||| | |||| | || | ||||| | || ||||||||||||||
Sbjct 512 ATAGGTAATATCATT-ATACCTAAGAAGCCAGCAAGTGCCGGGCCTGTCGTGGAGGTGGA 570
Query 471 TCTCTCTCGGAGTAAAGTGGACACAAAGGATGGCCTTGGAACAAAGCTAGGCCTTGGAAC 530
||| | |||||||||| ||||||||| ||||||||||||||||| | ||||| | |||
Sbjct 571 TCTGGCACGGAGTAAAGCGGACACAAAAGATGGCCTTGGAACAAATCAAGGCCCTCAAAC 630
Query 531 AAAAGAAGGCTCCAAAGTCTCTGCTTC 557
|||||| |||||||||||||||| |||
Sbjct 631 AAAAGATGGCTCCAAAGTCTCTG-TTC 656
> AT2G19690.2 | Symbols: PLA2-BETA | phospholipase A2-beta | chr2:8503260-8504821
FORWARD LENGTH=699
Length=699
Score = 189 bits (102), Expect = 3e-47
Identities = 256/326 (79%), Gaps = 27/326 (8%)
Strand=Plus/Plus
Query 82 CAG-GAGAAGTGCAGCAA-CACCTGCATTGCACAAAACTGCAACAGTCTTGGC-ATTC-A 137
||| ||| |||| | ||| || ||||||||||| || || ||| |||| | |||| |
Sbjct 147 CAGTGAGGAGTGTA-CAAGAACTTGCATTGCACAGAATTGTGACACTCTT-TCTATTCGA 204
Query 138 CTATGGGAAGTACTGTGGGATAGGTTAC-TT-TGGATGTCGAGGAGAACCA-CCTTGTGA 194
||||||||||| |||||||| || || || ||| |||| || | | | ||||||||
Sbjct 205 -TATGGGAAGTATTGTGGGATTGG--ACATTCTGGTTGTCCTGGTG-AGGAGCCTTGTGA 260
Query 195 TGATCTTGATGCTTGTTGTATGACTC-ATGACAATTGTGTTGATTTAAAAGGTATGACTT 253
|||||||||||||||||||| || || ||||| |||||||||| ||||| |||||||||
Sbjct 261 TGATCTTGATGCTTGTTGTAAGA-TCCATGACCATTGTGTTGAGTTAAACGGTATGACTA 319
Query 254 ACGTTAA-CTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAGAAAATCGATTAAA 312
|| | || |||||| ||| ||||| | || |||||||||| |||||| ||| |||| |||
Sbjct 320 ACAT-AAGCTGCCATAAGAAGTTCCAGCGATGCGTAAACAGGCTAAGCAAAGCGATAAAA 378
Query 313 C-GATCTAACGGTCAAAA-GATTGGATTCTCCACTCAA-TGCCCTTATTC-GATAGTGAT 368
| | ||||| ||||| | ||||||| ||||| || ||||||||||| | |||| ||
Sbjct 379 CAG-TCTAAAAA-CAAAAAGGTTGGATTTTCCACA-AAGTGCCCTTATTCAG-TAGTCAT 434
Query 369 ACCAACCGTGT-TCAATGGAATGGAT 393
||| || ||| |||| |||||||||
Sbjct 435 ACCTACGGTGAATCAA-GGAATGGAT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5