BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491814
Length=3422
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29440.1 | Symbols: | Regulator of Vps4 activity in the MVB... 3064 0.0
> AT4G29440.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr4:14473757-14477877 REVERSE LENGTH=3614
Length=3614
Score = 3064 bits (1659), Expect = 0.0
Identities = 2015/2181 (92%), Gaps = 47/2181 (2%)
Strand=Plus/Plus
Query 1 CAGATCACAAAATTTCCATCTGATTTTCTTCAACAAAAACCCTAAAATCCTTGATTTTTC 60
||||||||||||||||||||||| |||| |||||||||||||| ||| || ||||||||
Sbjct 19 CAGATCACAAAATTTCCATCTGA-TTTCCTCAACAAAAACCCTTAAAGCCCAGATTTTTC 77
Query 61 GTTTCAATT-T-TGTACTCGGAGACT-CGC-AGACCTCAAAAGGCTTGATCTTTCGTTTC 116
||||||||| | |||||||||||||| | | |||||||||||||||||| ||||||||||
Sbjct 78 GTTTCAATTGTGTGTACTCGGAGACTCCACAAGACCTCAAAAGGCTTGACCTTTCGTTTC 137
Query 117 TCTGATCAAGTTTTCGCCCTC-ATGAAGAAGGTGCTTCATCGAAGTTTTAAGCCTGCGAA 175
||| |||||| ||||| ||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 138 TCTAATCAAG-TTTCG--CTCAATGAAGAAGGTGCTTCATCGAAGTTTCAAGCCTGCCAA 194
Query 176 ATGCAAAATTGCTTTACAAATGGCGGCTTCACGCCTGAAAATCCTGAAGAACAAAAAGGA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 ATGCAAAATTGCTTTACAAATGGCGGCTTCACGCCTGAAAATCCTGAAGAACAAAAAGGA 254
Query 236 TACACAGATTAAACAATTGAGGAGAGAATTAGCTCAATTGCTTGAGTCTGGCCAAACCCA 295
|||||||||||| ||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct 255 TACACAGATTAAGCAACTGAGGAGAGAATTAGCTCATTTGCTTGAATCCGGCCAAACCCA 314
Query 296 GACAGCTAAAATTCGGGTGGAGCATGTGGTGAGAGAAGAGAAGACAGTGGCTGCTTATGA 355
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 315 AACAGCTAAAATTCGGGTGGAGCATGTGGTAAGAGAAGAAAAGACAGTAGCTGCTTATGA 374
Query 356 ACTCGTTGGTATATATTGTGAACTTCTTGTTGCTCGTTTGGGTGTGATTGACTCTCAAAA 415
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 375 GCTCGTTGGTATATATTGTGAACTTCTTGTTGCTCGTTTGGGTGTCATTGACTCTCAAAA 434
Query 416 GACCTGTCCTAATGATCTTAAGGAAGCTGTCGCGAGTGTCTTATACGCTTCTCAAAGGTT 475
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 435 GACATGTCCTAATGATCTTAAGGAAGCTGTCGCAAGTGTCTTATACGCTTCTCAAAGGTT 494
Query 476 AACAGATGTTGCGGAGCTCTCAGATATTGTTAAGCATTTCTCTGCAAAGTATGGTAAAGA 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AACAGATGTTGGGGAGCTCTCAGATATTGTTAAGCATTTCTCTGCAAAGTATGGTAAAGA 554
Query 536 TTTTGTTTCAGCTGCTATTGGTTTGCAACCGGATTCTGGTGTGAGTCGTTTGTTGGTGGA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 555 TTTTGTTTCAGCTGCTATTGGTTTGCAACCGGATTCTGGTGTGAGTCGTTTGTTAGTAGA 614
Query 596 GAAATTGTCTGTTAAAGCTCCTGATGGTCCAACGAAGATCAAAATTTTGACGGAGATTGC 655
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 615 GAAATTGTCTGTTAAAGCTCCTGATGGTCCAACAAAGATCAAAATTTTGACGGAGATTGC 674
Query 656 TACGCAGCATAATGTAACTTGGGAAGCAGAATCTTTGGTTGAATCAGATCCCAAGGAAAC 715
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 675 TACGCAGCATAATGTAACTTGGGAAGCAGAGTCTTTGGTTGAATCAGATCCAAAGGAAAC 734
Query 716 CGTATTGGCGAGTGGAGCAAGTTC--CTGTCACTCTCAGTCAGCAACTGGAATAAAGTCG 773
| | | |||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 735 CATGTCGGCGAGTGGAGCAAGTTCATCTGTG--TCTCAGCCAGCAACTGGAATAAAGTCG 792
Query 774 GAGTCTTCAAGAATCC-GAAACAATCAACCTCCAGAATTTCAAGCTCCAGCTACTGTCAA 832
|||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 793 GAGTCTTCAAGAATCCAGAA-CAATCAACCTCCAGTATTTCAAGCTGCAGCTACTGTCAA 851
Query 833 TGTGTCGCAAAATTCATATGCAAGTGATGGAAGATCTTCAAGCCGCATGACATCTGCTGA 892
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 852 TGTGTCGCAGAATTCATATGCAACTGATGGGAGATCTTCAAGCCGCATGACATCTACTGA 911
Query 893 TTTCAACGTTGGGAAGACAGCTGATCACTATCATCAAGACCCAAAACCTTCTGGAGATAG 952
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TTTCAACGTTGGGAAGACACCTGATCACTATCATCAAGACCCAAAACCTTCTGGAGATAG 971
Query 953 AACTGACGGTAGAGAACACAGACATCACAATCCAGGTCATGGGGATTCATCTCCATTCGA 1012
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 972 AGTTGACGGTAGAGAACACAGGGATCACAATCCAGGTCATGGGGATACATCTCCATTCGA 1031
Query 1013 AACAGAA-TTTGTTGATGCAACGAGTGCTGCACGTGCAGCTGCTGAATCTGCGGAAAGAG 1071
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1032 AAC-GAAATTTGTTGATGCAACGAGTGCTGCACGTGCTGCTGCTGAATCTGCGGAAAGAG 1090
Query 1072 CGAGTTTTGCTGCACGT-GCAGCTGCTGAGCTTTCAAGTAAAGAAAGAATGATGGCGATG 1130
||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1091 CGAGTTTTGCTGCACGTAG-AGCTGCTGAGCTTTCAAGTAAAGAAAGAATGATGATGATG 1149
Query 1131 CAGAATTCAAAAGAGTCGCGGAACTCATCCTCATATGATAAT-TTAAGAAACAATCCCCC 1189
|||||||||| ||||||||||||||||||||| ||||| ||| ||| ||| |||||||||
Sbjct 1150 CAGAATTCAACAGAGTCGCGGAACTCATCCTCGTATGAGAATCTTA-GAAGCAATCCCCC 1208
Query 1190 ACATAGTCGTACTAGTACCTCAAATGTGCAAAGCGGAGGTTTTGCTAAAGAAGAATTGTT 1249
||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| || ||
Sbjct 1209 ACATAGTCGTACTAGTAGCTCAAATATGCAAGGCGGAGGTTTTGGTAAAGAAGAGTTATT 1268
Query 1250 AAGAAGCAGTAACAAGCAAGAAGACCAATCTACTACTAGT----G--CAGAGTCTTCTAA 1303
|| ||||| ||||| ||||| ||| ||||||||||||| | | ||||||| |||||
Sbjct 1269 AAAAAGCAATAACAGGCAAGTAGATCAATCTACTACTACTACTAGAGCAGAGTCATCTAA 1328
Query 1304 GAAGACTGTTGATGAGCTATCAGAAAATGCTTCATGGAGGAGAGATCATTCTCGGGAGAA 1363
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1329 GAAGACTGTTGATGAGCTATCAGAAAATACTTCATGGAGGAGAGGTCATTCTCGGGAGAA 1388
Query 1364 CTCATTGGGGATGAGGCCGAATGATTCCTTTGCTAGAATAGGTAGAGAGAAGCAGCAGCC 1423
|||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1389 CTCATTGGAGATGAGGCCGAATGATTCCTTTGCTAAAATAGGTAGAGAGAAACAGCAGCC 1448
Query 1424 AAGTATGAATGAGATAAACCAAAGCAGTTCAGAAGATGTTCTAAATAAGAAACAATCAAG 1483
| ||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1449 AGGTATGGATGATATAAACCTTAGCAGTTCAGCAGATGTTCTAAATAAGAAACAATCAAG 1508
Query 1484 CCGAGCTTCATCGCATTCACCGTCAAGCAATTTTTCCGATGACAATGATGTCACTGCATT 1543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1509 CCGAGCTTCATCGCATTCACCGTCAAGCAATTTTTCCGATGATAATGATGTCACTGCCTT 1568
Query 1544 GGACCATATCGATTCACCAAGCATCTTGGAGGAAAACCGATTTCAGAGTACTGTTGGAGA 1603
||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||
Sbjct 1569 GGACCATATCGATTCACCAAGTATCTTTGAGGAAAACAAATTTCAGAGCACTGTTGGAGA 1628
Query 1604 TAGAGAGAGCTACAATGACGGTCCTGATGTTGTTGTTGCTCCGGCTTTTTATGACTATAG 1663
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1629 TAGAGAGAGCTACAATGACAGTCCTGTTGTTGTTGTTGCTCCGGCTTTTGATGACTATAG 1688
Query 1664 CTCGTTTTTTGACAAACCTCAATTCGACACAGAAGATGCTTGTCATGATGAACCAGAACA 1723
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1689 CTCGTTTTTTGACAAACCTCAATTCGACACAGAAGATGCTTATCATGATGAACCAGAACA 1748
Query 1724 AGGATTAGGATTTTCATTGCTTGGCAGTAGCAGCAAAACATCTAATCATATGCCTACAGA 1783
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1749 AGGATTAGGATTTTCATTGCTTGGCAGTAGCAGCAAAACATCGGATCATATGCCTACAGA 1808
Query 1784 AATAAGTTCATGGAGCTTCGAAGGACACAATGCTCTGAGACAAAC-CAGCTCAGCCTCAA 1842
||||||||||||||| ||||||||||||| | |||| || |||| ||||||||||||||
Sbjct 1809 GATAAGTTCATGGAGCCTCGAAGGACACAAGGATCTGGGA-AAACTCAGCTCAGCCTCAA 1867
Query 1843 CCTCACAGGTTCTTGAAAAGGAGAAGCCAAGTTCTCC---AATATTTGATGATGGTCCTA 1899
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1868 CCTCACAGGTTCTTGAAAAGGAGAAGCCAAGTTCTCCTCCAACATTTGATGATGGTCCTA 1927
Query 1900 CAAGTCCTCCAGCCTCTCTGCATGAGCCTGAGCCTGGGCCGTCTGCAAAGTTTGATGATT 1959
||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1928 CAAGTCCTCCAGCTTCTCTGCATGAGCCTGAGCC-G-----TCTGCAAAGTTTGATGATT 1981
Query 1960 ATGACCAAGATTCTGAAAGTGAAGAAGACAATTTAAAAAACAAAGGAAATATTTCTGGAC 2019
|||||| ||||||||||||||||||||||||| || || | | | || | ||||
Sbjct 1982 ATGACCGAGATTCTGAAAGTGAAGAAGACAATCTAGGAA-----G-AC-T-TTCC-GGAC 2032
Query 2020 ATGTAGAAGAAAAGCCGAAGCTGAAATCTCAGAAGTCCCAAATGTCTGAAGCTCCTGATG 2079
|| ||||| |||| ||||||||| | |||||||||| || |||||||||| ||||||||
Sbjct 2033 GTGCAGAAGGAAAGTCGAAGCTGACAGCTCAGAAGTCTCACATGTCTGAAGGTCCTGATG 2092
Query 2080 ATTTAGGACGCTACTTTTTCCCATCAGATACAGAAGACCAAGGAGATGATTCCAAGATAC 2139
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 2093 ATTTAGGACGTTACTTTTTCCCATCAGACACAGAAGACCAAGGAGATGATTCCAAAACAC 2152
Query 2140 AGGAAGAATCCGACATAGAGA 2160
|||||||||| ||| |||||
Sbjct 2153 AGGAAGAATCTGACGCAGAGA 2173
Score = 1035 bits (560), Expect = 0.0
Identities = 863/1006 (86%), Gaps = 33/1006 (3%)
Strand=Plus/Plus
Query 2157 GAGAATGAAACGACTCTCCCATCTTATGGAAT-GAGTCCCCCAAAAGAGAAGACATGGTC 2215
||||||||||||||||||||||||||||| || |||||| |||| ||| ||||| | |||
Sbjct 2215 GAGAATGAAACGACTCTCCCATCTTATGG-ATCGAGTCCGCCAAGAGACAAGACGTCGTC 2273
Query 2216 CAAATCTGTTAAAGAGCATGTCCCAACGGAGGTTGATCCGTCGAGGTCTTCTTCTTTTCA 2275
|||||| | |||||| || | ||||| |||||||||||||| |||||||||||| | ||
Sbjct 2274 TAAATCTATAAAAGAGTATCTTCCAACAGAGGTTGATCCGTCAAGGTCTTCTTCTCTGCA 2333
Query 2276 GACAG--------A-C------AGGAAAGAACTTTACACTCAAAAAGCAAGCAACAT-GG 2319
||||| | | ||||| |||||||||||||| |||||||| ||| | |
Sbjct 2334 GACAGCTTCTTCTAGCAGTATTAGGAATGAACTTTACACTCAGAAAGCAAGTAAC-TCAG 2392
Query 2320 ACAAAAGACCAAGCTCTATACCTCCAGATTCATCTTCTAGTGATGATGAATCAGAGGTTA 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2393 ACAAAAGACCAAGCTCTATACCTCCAGATTCATCTTCTAGTGATGATGAATCAGATATGG 2452
Query 2380 AACTTCGGGAGAGATTTTCTG-CTAGATATCAAGATAAAAGAGCTGAGTCAAGAACCCCG 2438
|||||| ||||| ||||| | ||||||||||| |||||| ||||||||||||||| |
Sbjct 2453 AACTTCCAAAGAGAGTTTCTTTC-AGATATCAAGAGAAAAGAACTGAGTCAAGAACCCGG 2511
Query 2439 TCCACACATCTACATTCGCATGTCAGCCACGAGGACTTGAAGGAAAAAATCCCGACTCGA 2498
||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||
Sbjct 2512 CCCACACATCTACATTCGGGTGTCAGCCATAAGGACTTGGAGGAAGAAATCCCGACTCGA 2571
Query 2499 GCTTCTACCAGAAGTCATGAGAGGAGGACCCACAAGACCACCCCTGCCTCTGCTTCCGCT 2558
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 2572 GCTTCTACCAGAAGTCAAGATAGGAGGACCCACAAGACCACCCCTGCCTCTGCTTCTGCT 2631
Query 2559 TCATATTTCCATGTAATGTCCAGTGACGATGAAGATGAGAAAGAAGTCCATAGAGATACT 2618
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2632 TCATATTTTCACACAATGTCCAGTGACGATGAAGATGAGAAAGAAGTCCATAGAGATACT 2691
Query 2619 GCACGCACCCAAACCAAGCCTTCTATTTCCATCTCAAGAAGAACAAAGGGCCAAGAGAGA 2678
|||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2692 GCACACATTCAAACCAGGCCTTATATTTCCATCTCAAGAAGAACAAAGGGCCAAGAGAGA 2751
Query 2679 AGACCATCCCTGGTTACTGCGAAAACTGAGACAGTCTCTCATGATCAAGAGTCTCCTCCA 2738
||||||||||| |||||||| |||| ||| | ||| ||| |||| |||| ||||| |||
Sbjct 2752 AGACCATCCCTCGTTACTGCAAAAATTGACAAAGTTTCTTTTGATGAAGAATCTCCACCA 2811
Query 2739 AAGCCAAGTCCTGAGGCCAAGCCACT-AGCTAAGCAACA-GGTATCAGCCTCTTCTTCAA 2796
|||| ||||||||||||||||||||| | |||||||||| || |||||| || |||| ||
Sbjct 2812 AAGCTAAGTCCTGAGGCCAAGCCACTGA-CTAAGCAACAAGG-ATCAGCTTCCTCTTTAA 2869
Query 2797 GCTATCTTCCAAAAACTGACAAAGCTTCTCACGATCATGAATCTCCTCCAAAGCTAAGTA 2856
|||||||||| |||||||| |||| |||||||||||| ||||||| |||||||||| ||
Sbjct 2870 GCTATCTTCCCAAAACTGAGAAAGTTTCTCACGATCAAGAATCTCATCCAAAGCTAGGT- 2928
Query 2857 CT-GAGGCCAAGCCACTGACTAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCA 2915
|| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2929 CTTGGGGCCAAACCACTGATTAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCA 2988
Query 2916 AAAACTGACAAAGCTTCTCACGATCAAGAATCTACTCCAAAGCTAGGTCTAAAGGCCAAG 2975
||||| |||||||||||| ||||||||| ||| |||||||||||| || ||||| ||
Sbjct 2989 AAAACCAACAAAGCTTCTCCCGATCAAGATTCTCCTCCAAAGCTAGTTCCAAAGGAAAAA 3048
Query 2976 CCAGCGGCTAAGCAACAAGGATCAGCTACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAA 3035
||||| |||||||||| |||||||||| |||||| ||||| ||||||||||||||| |||
Sbjct 3049 CCAGCAGCTAAGCAACGAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACAAA 3108
Query 3036 ATCT-CTCACTAT-AGAGAATCTCCTCCAAAGTCAAGTTC-AGAGGCTAAGTCAATGGCT 3092
|| ||| | || | ||| |||||||||||| | | ||| | ||| ||| || |||
Sbjct 3109 G-CTTCTCCCGATCA-AGATTCTCCTCCAAAG-CTACTTCCAAAGGAAAAGCCAGCAGCT 3165
Query 3093 AAGCAAGAAGGGTTAGCTTCTTCTTCAAGCTCGCTTCCCAAAACTG 3138
|||||| |||| | ||| ||||||||||||| ||||| |||||||
Sbjct 3166 AAGCAACAAGGATCAGCAACTTCTTCAAGCTCTCTTCCAAAAACTG 3211
Score = 929 bits (503), Expect = 0.0
Identities = 661/735 (90%), Gaps = 20/735 (3%)
Strand=Plus/Plus
Query 2700 AAAACTGAGACAGTCTCTCATGATCAAGAGTCTCCTCCAAAGCCAAGTCCTGAGGCCAAG 2759
|||||||||| ||| ||||| |||||||| |||| |||||||| | ||| || ||||||
Sbjct 2881 AAAACTGAGAAAGTTTCTCACGATCAAGAATCTCATCCAAAGCTAGGTCTTGGGGCCAAA 2940
Query 2760 CCACTAG-CTAAGCAAC-AGGTATCAGCCTCTTCTTCAAGCTATCTTCCAAAAACTGACA 2817
||||| | |||||||| ||| |||||| ||||||| ||||| |||||||||||| |||
Sbjct 2941 CCACT-GATTAAGCAACAAGG-ATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACCAACA 2998
Query 2818 AAGCTTCTCACGATCATGAATCTCCTCCAAAGCTAAG-TACTGAGGCCAAGCCA-CTGAC 2875
||||||||| |||||| || |||||||||||||| || | | ||| || ||| | | |
Sbjct 2999 AAGCTTCTCCCGATCAAGATTCTCCTCCAAAGCT-AGTTCCAAAGGAAAAACCAGCAG-C 3056
Query 2876 TAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACAAAGCTTCTCA 2935
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3057 TAAGCAACGAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACAAAGCTTCTCC 3116
Query 2936 CGATCAAGAATCTACTCCAAAGCTAGGTCTAAAGGCCAAGCCAGCGGCTAAGCAACAAGG 2995
||||||||| ||| ||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 3117 CGATCAAGATTCTCCTCCAAAGCTACTTCCAAAGGAAAAGCCAGCAGCTAAGCAACAAGG 3176
Query 2996 ATCAGCTACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAAATCTCTCACTATAGAGAATC 3055
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3177 ATCAGCAACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAAATCTCTCACTATAGAGAATC 3236
Query 3056 TCCTCCAAAGTC-AAGTTCAGAGGCTAAGTCAATGGCTAAGCAAGAAGGGTTAGCTTCTT 3114
|||| ||||| | || | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3237 TCCTTCAAAG-CTAACTCCAGAGGCTAAGTCAATGGCTAAGCAAGAAGGATTAGCTTCTT 3295
Query 3115 CTTCAAGCTCGCTTCCCAAAACTGTGACATCACCTGACCCAGAAACTCCGGCAAAGGACA 3174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3296 CTTCAAGCTCGCTTCCCAAAACTGTGACATCACCTGACCCAGAAACTCCGGCAAAGGAGA 3355
Query 3175 AAGCTAGCCATGTACATCCCAAACTCCCAGATTACGACGACATATTTGCCAAGCTCGGGG 3234
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3356 AAGCTAGCCATGTACATCCCAAACTCCCAGATTACGATGACATATTTGCCAAGCTCGGGG 3415
Query 3235 CTCTTCGTCGCTGAATTCTTCCCGCTCTGTTGATATATACATAT-T-CAT-TG--TT-TT 3288
|||||||||||||||||||||||| | |||| ||||||||||| | ||| | || ||
Sbjct 3416 CTCTTCGTCGCTGAATTCTTCCCGTT-TGTTTATATATACATACATACATATTCATTGTT 3474
Query 3289 -A-TTAGCCCTCAATTCTTTTCTTTGATTGGTTTGCTTGTAGATT-GAACTTGAATTTCG 3345
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3475 CAATTAGCCCTCAATTCTTTTCTTTGATTGGTTTGCTTGTAGATTTGAACTTGAATTTCG 3534
Query 3346 CATCCCGAGGATAACTTTTTGGCCGTGAGGTATCTCATCTGTTTTCTGTTACATGTTTGG 3405
||||| ||| |||||||||| |||||||| ||||||||||||||| | ||||||||||||
Sbjct 3535 CATCCTGAGCATAACTTTTTTGCCGTGAGATATCTCATCTGTTTTGTATTACATGTTTGG 3594
Query 3406 CTTCCTTGTCATATA 3420
||| |||||||||||
Sbjct 3595 CTTTCTTGTCATATA 3609
Score = 305 bits (165), Expect = 1e-81
Identities = 283/339 (83%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 2806 CAAAAACTGACAAAGCTTCTCACGATCATGAATCTCCTCCAAAGCTAAGTACTGAGGCCA 2865
|||||| |||||||| |||| ||| | |||||||| |||||||||||| |||||||||
Sbjct 2771 CAAAAATTGACAAAGTTTCTTTTGATGAAGAATCTCCACCAAAGCTAAGTCCTGAGGCCA 2830
Query 2866 AGCCACTGACTAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTGACA 2925
||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
Sbjct 2831 AGCCACTGACTAAGCAACAAGGATCAGCTTCCTCTTTAAGCTATCTTCCCAAAACTGAGA 2890
Query 2926 AAGCTTCTCACGATCAAGAATCT-ACTCCAAAGCTAGGTCTAAAGGCCAAGCCAGCGGCT 2984
||| ||||||||||||||||||| | ||||||||||||||| |||||| ||| | | |
Sbjct 2891 AAGTTTCTCACGATCAAGAATCTCA-TCCAAAGCTAGGTCTTGGGGCCAAACCA-CTGAT 2948
Query 2985 -AAGCAACAAGGATCAGCTACTTCTTCAAGCTCTCTTCCAAAAACTGAAAAAATCT-CTC 3042
|||||||||||||||||| |||||| ||||| |||||||||||| || ||| || |||
Sbjct 2949 TAAGCAACAAGGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACC-AACAAAGCTTCTC 3007
Query 3043 ACTAT-AGAGAATCTCCTCCAAAGTCAAGTTC-AGAGGCTAAGTCAATGGCTAAGCAA-G 3099
| || | ||| |||||||||||| | ||||| | ||| || || ||||||||| |
Sbjct 3008 CCGATCA-AGATTCTCCTCCAAAG-CTAGTTCCAAAGGAAAAACCAGCAGCTAAGCAACG 3065
Query 3100 AAGGGTTAGCTTCTTCTTCAAGCTCGCTTCCCAAAACTG 3138
| || | ||||||||||| ||||| ||||| |||||||
Sbjct 3066 A-GGATCAGCTTCTTCTTTAAGCTTTCTTCCAAAAACTG 3103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170316771485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5