BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491815
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29430.1 | Symbols: rps15ae | ribosomal protein S15A E | chr... 1005 0.0
AT2G19720.1 | Symbols: rps15ab | ribosomal protein S15A B | chr... 420 9e-117
> AT4G29430.1 | Symbols: rps15ae | ribosomal protein S15A E | chr4:14472400-14473621
FORWARD LENGTH=668
Length=668
Score = 1005 bits (544), Expect = 0.0
Identities = 606/634 (96%), Gaps = 12/634 (2%)
Strand=Plus/Plus
Query 1 GAGAAATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCGGAGAGAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 36 GAGAAATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCTGAGAGAC 95
Query 61 GAGGAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCATTCCTGAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 96 GAGGAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCGTTCTTGAGAA 155
Query 121 TCATGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTCTATGATCCACATAGAGTTGGTA 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 156 TCATGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTGTATGATCCACATAGAGTTGGGA 215
Query 181 GAATAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTATAGGCAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 216 GAATAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTACAGGCAAG 275
Query 241 ACGTTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACTCTTCCAACACGTCAGTGGG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 276 ACGTTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACACTTCCAACACGTCAGTGGG 335
Query 301 GTTATGTTGTAATCACAACCCCGGATGGAATTTTGGACCATGAAGAAGCAATCAAACGGA 360
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 336 GTTATGTTGTAATCACAACTCCGGATGGGATTTTGGACCATGAAGAAGCAATCAAACGGA 395
Query 361 ATGTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGAATAGCTTAAGCTAGCACATGGCAAG 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 396 ATGTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGAATAGCTTGAGCTAGCACATGGCAAG 455
Query 421 AACCTTATAGTGTCATAAGGATTCAACGAAAGTTTGAAGTTTCGATCCTTCTTCCTTTTG 480
|||||| |||||||| ||||||||||| |||| ||||||||||| ||||||| ||| |||
Sbjct 456 AACCTTCTAGTGTCA-AAGGATTCAACAAAAGATTGAAGTTTCGGTCCTTCT-CCTGTTG 513
Query 481 CTTTTCTCTTTTT-GTAACTTGCATTGTCTTTGAACAGATTGGCAATTATTAGATAACAC 539
||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CTTTT-TGTTTTTTGTAACTTGCATTGTCTTTGAACAGATTGGCAATTATTAGATAACAC 572
Query 540 ATTTTGTTGCTAAATTCAAAGATCTTGTTGTTATGACAACATTTATATTTTGGACGAGAA 599
|||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 573 ATTT-GTTGCTAAATTCAAAGATCTTGTTGTTA-G------TTTATATTTTGGACGAGAA 624
Query 600 ATTTGTTCTTCCATAGCTATCTGAATAATCTATA 633
||||||||||||||||||||||||||||||||||
Sbjct 625 ATTTGTTCTTCCATAGCTATCTGAATAATCTATA 658
> AT2G19720.1 | Symbols: rps15ab | ribosomal protein S15A B | chr2:8510020-8511339
REVERSE LENGTH=674
Length=674
Score = 420 bits (227), Expect = 9e-117
Identities = 339/394 (86%), Gaps = 4/394 (1%)
Strand=Plus/Plus
Query 5 AATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCGGAG-AGACGAG 63
|||||||||||| || ||||||||||| ||||| ||||| |||||||| ||| || ||||
Sbjct 81 AATGGGGAGGAGAATATTGAACGATGCATTGAGAACGATCGTGAATGCTGAGAAG-CGAG 139
Query 64 GAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCATTCCTGAGAATCA 123
| ||||||||||||||| | ||||| |||| ||||| |||||||| || || | |||||
Sbjct 140 GGAAAGCTTCGGTGGAGTTGAAACCTGTCTCTACCGTAATGTCTTCGTTTCTCAAAATCA 199
Query 124 TGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTCTATGATCCACATAGAGTTGGTAGAA 183
|||| |||||||| || ||||||||||| |||||| |||||||||| |||||||| ||||
Sbjct 200 TGAAAGAGAAAGGGTACATCAAGAACTTCCAAGTCCATGATCCACACAGAGTTGGAAGAA 259
Query 184 TAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTATAGGCAAGACG 243
|||| |||||||| ||||| ||||||||||| ||||||||||| || |||||||| ||||
Sbjct 260 TAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTCTCACTTATAGGCAGGACG 319
Query 244 TTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACTCTTCCAACACGTCAGTGGGGTT 303
||| |||||| ||||| | | ||||||| |||||||| |||||||| || ||||||||||
Sbjct 320 TTAAGGCAAATGAGATCGGGCAATACACAGAACGCACACTTCCAACGCGCCAGTGGGGTT 379
Query 304 ATGTTGTAATCACAAC-CCCGGATGGAATTTTGGACCATGAAGAAGCAATCAAACGGAAT 362
|| | || || ||||| ||| ||||| |||||||| ||||||||||| || |||||||||
Sbjct 380 ATATAGTGATTACAACTCCC-GATGGCATTTTGGATCATGAAGAAGCTATTAAACGGAAT 438
Query 363 GTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGAA 396
|||||||||||||||||||| |||||| | ||||
Sbjct 439 GTGGGTGGTCAGGTTCTTGGTTTCTTTCATTGAA 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5