BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491816
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29420.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2126 0.0
> AT4G29420.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:14470459-14472232 REVERSE LENGTH=1625
Length=1625
Score = 2126 bits (1151), Expect = 0.0
Identities = 1459/1605 (91%), Gaps = 32/1605 (2%)
Strand=Plus/Plus
Query 1 CCTTCAATTTCCCAAATCAA-CAACGCCATGGAAGAGTTACCTCCAGAGCTCTTGG-TCA 58
|||||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||| |||
Sbjct 1 CCTTCAATTTCCCAAATCAAGAAACACCATGGACGAGTTACCACCAGAGCTC-TGGATCA 59
Query 59 AAATTCTGAGTCGACTCAACGATTCCGAATCCCTAGCTCGATGTCGAGTCGCTTCCAAGA 118
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 60 AAATTCTGAGTCGAATCAACGATTCCGAATCCCTAGCACGATGTAGAGTCGCTTCCAAGA 119
Query 119 CATTGAACTTACTTTTTCGAGAGGTTCGCGCCGTGAATCTCACCTGCACCTTGTCCCGGT 178
||||||||| |||| |||||||||||||||||||||||||| ||| |||| ||| ||||
Sbjct 120 CATTGAACTCGCTTTCTCGAGAGGTTCGCGCCGTGAATCTCATCTGTACCTGGTCTCGGT 179
Query 179 TCTTAAAATCGCGGTCCATCGTCGTCGTCACACCGTTCAAGACGATATTTAGGAGCCTCA 238
|||||||||||||||||||||||| |||||||||||||||||||| || || ||||| |
Sbjct 180 ACTTAAAATCGCGGTCCATCGTCGTTGTCACACCGTTCAAGACGATCTTCAGAAGCCTAA 239
Query 239 TCGAGAATTCCT-GTAACATTCGCTCAATCTCAATCGGAGTCGATAAGGCACTTATCGGA 297
||||||| | || | || ||||||||||||||| |||||||||||||||| |||| |||
Sbjct 240 TCGAGAACT-CTAGCAAAATTCGCTCAATCTCAGTCGGAGTCGATAAGGCGCTTAAGGGA 298
Query 298 ATGTCGTTTGACGACTTGAACGAAGAAGATTCCAAGGATTTGTACCTGACCGATGTCGAA 357
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGTCGTTTGACGACTTCAATGAAGAAGATTCCAAGGATTTGTACCTGACCGATGTCGAA 358
Query 358 TTCGCGAAGGAGTGGTTGCCTAGGGTTCGTGAAGATCTGGA-AATGTTGTCAATTTCGGA 416
|| | |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 359 TTTGTGAAGGAGTGGTTGCCTAGGGTTCGTGAAGACCTGGAGAAT-TTGTCAATTTCGGA 417
Query 417 TTTCTGGATTCAGTCTTGCTGGAGAAAGTCGGATATTTTGGCGCTCATTTCTTCAAACTG 476
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TTTCTGGATTCAATCTTGCTGGAGAAAATCGGATATTTTGGCGCTCATTTCTTCAAACTG 477
Query 477 TAGTAAGTTAGTCAAACTAGAGGTGAAGAATGCTTGGCTCTCAGTTGTTGGCCTGAGGGA 536
|||||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 478 TAGTAAGTTAGTGAAACTAGAGGTGAAGAATGCTTGGCTCTCTGTAGTTGGCCTGACTGA 537
Query 537 GATGTCTAATCTTAGACATTTGACCCTTGAGTTCATTC-GACTTGATGATGAGAATCTAG 595
|||| ||||||| ||| | ||||| ||||| |||| || |||||||||||||||||||||
Sbjct 538 GATGCCTAATCTCAGATACTTGACACTTGAATTCA-TCAGACTTGATGATGAGAATCTAG 596
Query 596 AGAAGGTCAATGATTGTTTCCCTTTCCTTCAAGTGCTGAATTTGATTGGCGTTGGAGGAC 655
||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 597 AGAAGGTCAATGATTGTTTCCCTTTTCTTCAAGAGCTGAATTTGATTGGTGTTGGAGGAC 656
Query 656 TTAAGGAACCGAGAATTCATTTTCTGCATCTAAAGAGTTGCCATTGGACTGTGTCGAATG 715
|||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 657 TTAAGGAACCAAGAATCCATTTTCTTCACCTAAAGAGTTGTCATTGGACTGTGTCGAATG 716
Query 716 CTCCACTTTCCTTGGCTATAGTGGCGCCAAACCTTCTTGAACTCAAGCTAAAATGCAACA 775
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 717 CTCCACTTTCCTTGGCTATCGTGGCGCCAAACCTGCTTGAACTGAAGCTAAAATGCAACA 776
Query 776 AGCCTAAATCTCTTATACTCGAAACACCCAAGTTGGTGAAATTCCATTTTTCTGTAGAGG 835
|||||||||||||| || | ||||| |||||||||||| ||| |||| ||||||| ||||
Sbjct 777 AGCCTAAATCTCTTCTAGTTGAAACGCCCAAGTTGGTGCAATGCCATCTTTCTGTGGAGG 836
Query 836 ATGCCGAAGGTGTTGGTTTCGGGGAGTTTCGAGATCTGAATTCTTTGGAGCTCATATCTC 895
| || ||||||||| |||| |||||||||| ||||||||| |||| |||||| ||||||
Sbjct 837 ACGCTGAAGGTGTTAGTTTTGGGGAGTTTCAAGATCTGAAGACTTTAGAGCTCGTATCTC 896
Query 896 CTGACATGTACAGACTAATCAGCAACATCCGTTATGGCAACAAGATCAGAAAGCTTGCAG 955
|||| ||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 897 CTGATATGTACAGATTAATCAGCAACATCAGTTTTGGCAACAAGATCAAAAAGCTTGCAG 956
Query 956 TGGATTCAGTAAAGTCTATAGAACAATCTGAGAGGTTAGAACTTGGACTGGGAACACTCC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 957 TGGATTCAGTAAAGTCTATAGAACAATCTGAGAGGTTAGAACTTGGACTGGCAACAATCC 1016
Query 1016 TCCAAGGATTCCCTGACATCAGTTCTCTTAGTTTGAGTCCCAGGACTTGGTCAGATATCG 1075
|| ||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCAAAGCATTCCCTGGCATTACTTCTCTTAGTTTGAGTCCCAGGACTTGGTCAGATATCG 1076
Query 1076 AAACACATTTCCAAAGCCAA---GGCCTAGGACATATGAAGGGAACAGCCAGCCTGAAGC 1132
|||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1077 AAACACATTTCCAAAGCCAAGGCGGCCTAGGTGATATGAAGGGAACAGACAGCCTGAAGC 1136
Query 1133 AAATAACAGCACGTGTTCAGATGTCAGATCATACCAATGTTCATCAAACAGTTTCTTTCA 1192
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAATAACAGCACGTGTACAGATGTCAGATCATACCAATGTTCATCAAACAGTTTCTTTCA 1196
Query 1193 TCAGGTCTATTCTTAATAAATACAGAGGTTTGACAGACATGAGACTGATGATTCACCAGG 1252
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCAGGTCTATTGTTAATAAGTACAGAGGTTTGACAGACATGAGACTGATGATTCACCAGG 1256
Query 1253 ACAAAGATCCTAGAGTAAGAAGCAATCTGATATCGGCGTGTATAATGAGTAACCCGAGAG 1312
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 1257 ACAAAGATCCTAGAGTAAGAAGCAATCTGATATCGACATGTATGATGAGTAACCCGAGAG 1316
Query 1313 TGAGCTGGAAATGGGGAATGTGGGCTGAAGGAGGTGAAGATATGTGGGTCTAAGACCTAA 1372
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1317 TGAGATGGAAATGGGGAATGTGGGCTGAAGGAGGTGAAGATATGTGGGTCTAAGTCCGAA 1376
Query 1373 CATTCAAGTCTGAAACTTG-AATTCTCTTGTATATACTTGtgatgatgatgatgatgGTA 1431
||||||||||||||||||| ||| || | || |||||||||||||||||||||
Sbjct 1377 CATTCAAGTCTGAAACTTGGAAT-CT-T--------CT-GTGATGATGATGATGATGGTA 1425
Query 1432 ATGAAGAATGTGTCAAGAGTGTTTCCATATATTGTGTAACTTGTGTTGTGCTGAAACTTG 1491
| ||||||||||||||||||||| ||||| |||| | |||||||||||| |||
Sbjct 1426 ACAAAGAATGTGTCAAGAGTGTTTTCATATGTTGT-T-----GTGTTGTGCTGATGCTTT 1479
Query 1492 TCATGGATTTATAAAGCTTTTCATGAAGAGTTTGTATACAAATATAGAGATTTAGTCACC 1551
||| ||| |||||| |||| |||||||||||||||| |||||||||| | ||| |||||
Sbjct 1480 TCAGGGAGTTATAATGCTT--CATGAAGAGTTTGTATTCAAATATAGATAGTTATTCACC 1537
Query 1552 ATGTAAGGTCTATAGCTTCACCGTATAAAACAGGATTTGGATTTG 1596
||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1538 ATGTAAGATCTATAGCTTCACCATATAAAACAAGATTTGGATTTG 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5