BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491816 Length=1596 Score E Sequences producing significant alignments: (Bits) Value AT4G29420.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2126 0.0 > AT4G29420.1 | Symbols: | F-box/RNI-like superfamily protein | chr4:14470459-14472232 REVERSE LENGTH=1625 Length=1625 Score = 2126 bits (1151), Expect = 0.0 Identities = 1459/1605 (91%), Gaps = 32/1605 (2%) Strand=Plus/Plus Query 1 CCTTCAATTTCCCAAATCAA-CAACGCCATGGAAGAGTTACCTCCAGAGCTCTTGG-TCA 58 |||||||||||||||||||| ||| ||||||| |||||||| ||||||||| ||| ||| Sbjct 1 CCTTCAATTTCCCAAATCAAGAAACACCATGGACGAGTTACCACCAGAGCTC-TGGATCA 59 Query 59 AAATTCTGAGTCGACTCAACGATTCCGAATCCCTAGCTCGATGTCGAGTCGCTTCCAAGA 118 |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 60 AAATTCTGAGTCGAATCAACGATTCCGAATCCCTAGCACGATGTAGAGTCGCTTCCAAGA 119 Query 119 CATTGAACTTACTTTTTCGAGAGGTTCGCGCCGTGAATCTCACCTGCACCTTGTCCCGGT 178 ||||||||| |||| |||||||||||||||||||||||||| ||| |||| ||| |||| Sbjct 120 CATTGAACTCGCTTTCTCGAGAGGTTCGCGCCGTGAATCTCATCTGTACCTGGTCTCGGT 179 Query 179 TCTTAAAATCGCGGTCCATCGTCGTCGTCACACCGTTCAAGACGATATTTAGGAGCCTCA 238 |||||||||||||||||||||||| |||||||||||||||||||| || || ||||| | Sbjct 180 ACTTAAAATCGCGGTCCATCGTCGTTGTCACACCGTTCAAGACGATCTTCAGAAGCCTAA 239 Query 239 TCGAGAATTCCT-GTAACATTCGCTCAATCTCAATCGGAGTCGATAAGGCACTTATCGGA 297 ||||||| | || | || ||||||||||||||| |||||||||||||||| |||| ||| Sbjct 240 TCGAGAACT-CTAGCAAAATTCGCTCAATCTCAGTCGGAGTCGATAAGGCGCTTAAGGGA 298 Query 298 ATGTCGTTTGACGACTTGAACGAAGAAGATTCCAAGGATTTGTACCTGACCGATGTCGAA 357 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 299 ATGTCGTTTGACGACTTCAATGAAGAAGATTCCAAGGATTTGTACCTGACCGATGTCGAA 358 Query 358 TTCGCGAAGGAGTGGTTGCCTAGGGTTCGTGAAGATCTGGA-AATGTTGTCAATTTCGGA 416 || | |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| Sbjct 359 TTTGTGAAGGAGTGGTTGCCTAGGGTTCGTGAAGACCTGGAGAAT-TTGTCAATTTCGGA 417 Query 417 TTTCTGGATTCAGTCTTGCTGGAGAAAGTCGGATATTTTGGCGCTCATTTCTTCAAACTG 476 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 418 TTTCTGGATTCAATCTTGCTGGAGAAAATCGGATATTTTGGCGCTCATTTCTTCAAACTG 477 Query 477 TAGTAAGTTAGTCAAACTAGAGGTGAAGAATGCTTGGCTCTCAGTTGTTGGCCTGAGGGA 536 |||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct 478 TAGTAAGTTAGTGAAACTAGAGGTGAAGAATGCTTGGCTCTCTGTAGTTGGCCTGACTGA 537 Query 537 GATGTCTAATCTTAGACATTTGACCCTTGAGTTCATTC-GACTTGATGATGAGAATCTAG 595 |||| ||||||| ||| | ||||| ||||| |||| || ||||||||||||||||||||| Sbjct 538 GATGCCTAATCTCAGATACTTGACACTTGAATTCA-TCAGACTTGATGATGAGAATCTAG 596 Query 596 AGAAGGTCAATGATTGTTTCCCTTTCCTTCAAGTGCTGAATTTGATTGGCGTTGGAGGAC 655 ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 597 AGAAGGTCAATGATTGTTTCCCTTTTCTTCAAGAGCTGAATTTGATTGGTGTTGGAGGAC 656 Query 656 TTAAGGAACCGAGAATTCATTTTCTGCATCTAAAGAGTTGCCATTGGACTGTGTCGAATG 715 |||||||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||| Sbjct 657 TTAAGGAACCAAGAATCCATTTTCTTCACCTAAAGAGTTGTCATTGGACTGTGTCGAATG 716 Query 716 CTCCACTTTCCTTGGCTATAGTGGCGCCAAACCTTCTTGAACTCAAGCTAAAATGCAACA 775 ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 717 CTCCACTTTCCTTGGCTATCGTGGCGCCAAACCTGCTTGAACTGAAGCTAAAATGCAACA 776 Query 776 AGCCTAAATCTCTTATACTCGAAACACCCAAGTTGGTGAAATTCCATTTTTCTGTAGAGG 835 |||||||||||||| || | ||||| |||||||||||| ||| |||| ||||||| |||| Sbjct 777 AGCCTAAATCTCTTCTAGTTGAAACGCCCAAGTTGGTGCAATGCCATCTTTCTGTGGAGG 836 Query 836 ATGCCGAAGGTGTTGGTTTCGGGGAGTTTCGAGATCTGAATTCTTTGGAGCTCATATCTC 895 | || ||||||||| |||| |||||||||| ||||||||| |||| |||||| |||||| Sbjct 837 ACGCTGAAGGTGTTAGTTTTGGGGAGTTTCAAGATCTGAAGACTTTAGAGCTCGTATCTC 896 Query 896 CTGACATGTACAGACTAATCAGCAACATCCGTTATGGCAACAAGATCAGAAAGCTTGCAG 955 |||| ||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||| Sbjct 897 CTGATATGTACAGATTAATCAGCAACATCAGTTTTGGCAACAAGATCAAAAAGCTTGCAG 956 Query 956 TGGATTCAGTAAAGTCTATAGAACAATCTGAGAGGTTAGAACTTGGACTGGGAACACTCC 1015 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 957 TGGATTCAGTAAAGTCTATAGAACAATCTGAGAGGTTAGAACTTGGACTGGCAACAATCC 1016 Query 1016 TCCAAGGATTCCCTGACATCAGTTCTCTTAGTTTGAGTCCCAGGACTTGGTCAGATATCG 1075 || ||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1017 TCAAAGCATTCCCTGGCATTACTTCTCTTAGTTTGAGTCCCAGGACTTGGTCAGATATCG 1076 Query 1076 AAACACATTTCCAAAGCCAA---GGCCTAGGACATATGAAGGGAACAGCCAGCCTGAAGC 1132 |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 1077 AAACACATTTCCAAAGCCAAGGCGGCCTAGGTGATATGAAGGGAACAGACAGCCTGAAGC 1136 Query 1133 AAATAACAGCACGTGTTCAGATGTCAGATCATACCAATGTTCATCAAACAGTTTCTTTCA 1192 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 AAATAACAGCACGTGTACAGATGTCAGATCATACCAATGTTCATCAAACAGTTTCTTTCA 1196 Query 1193 TCAGGTCTATTCTTAATAAATACAGAGGTTTGACAGACATGAGACTGATGATTCACCAGG 1252 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1197 TCAGGTCTATTGTTAATAAGTACAGAGGTTTGACAGACATGAGACTGATGATTCACCAGG 1256 Query 1253 ACAAAGATCCTAGAGTAAGAAGCAATCTGATATCGGCGTGTATAATGAGTAACCCGAGAG 1312 ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct 1257 ACAAAGATCCTAGAGTAAGAAGCAATCTGATATCGACATGTATGATGAGTAACCCGAGAG 1316 Query 1313 TGAGCTGGAAATGGGGAATGTGGGCTGAAGGAGGTGAAGATATGTGGGTCTAAGACCTAA 1372 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1317 TGAGATGGAAATGGGGAATGTGGGCTGAAGGAGGTGAAGATATGTGGGTCTAAGTCCGAA 1376 Query 1373 CATTCAAGTCTGAAACTTG-AATTCTCTTGTATATACTTGtgatgatgatgatgatgGTA 1431 ||||||||||||||||||| ||| || | || ||||||||||||||||||||| Sbjct 1377 CATTCAAGTCTGAAACTTGGAAT-CT-T--------CT-GTGATGATGATGATGATGGTA 1425 Query 1432 ATGAAGAATGTGTCAAGAGTGTTTCCATATATTGTGTAACTTGTGTTGTGCTGAAACTTG 1491 | ||||||||||||||||||||| ||||| |||| | |||||||||||| ||| Sbjct 1426 ACAAAGAATGTGTCAAGAGTGTTTTCATATGTTGT-T-----GTGTTGTGCTGATGCTTT 1479 Query 1492 TCATGGATTTATAAAGCTTTTCATGAAGAGTTTGTATACAAATATAGAGATTTAGTCACC 1551 ||| ||| |||||| |||| |||||||||||||||| |||||||||| | ||| ||||| Sbjct 1480 TCAGGGAGTTATAATGCTT--CATGAAGAGTTTGTATTCAAATATAGATAGTTATTCACC 1537 Query 1552 ATGTAAGGTCTATAGCTTCACCGTATAAAACAGGATTTGGATTTG 1596 ||||||| |||||||||||||| ||||||||| |||||||||||| Sbjct 1538 ATGTAAGATCTATAGCTTCACCATATAAAACAAGATTTGGATTTG 1582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78814855650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5