BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491817

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29410.1 | Symbols:  | Ribosomal L28e protein family | chr4:...   754    0.0  


> AT4G29410.1 | Symbols:  | Ribosomal L28e protein family | chr4:14468244-14470167 
REVERSE LENGTH=709
Length=709

 Score =  754 bits (408),  Expect = 0.0
 Identities = 483/519 (93%), Gaps = 6/519 (1%)
 Strand=Plus/Plus

Query  1    TCCGGTACGAGTCTCGTTCTCTTCTCTATT-CCGCCGTCATCTAGGTCTGCGAATATCAA  59
            ||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct  9    TCCGGCACGAGTCTCGTTCTCTTCTCT-TTACCGCCGTCATCTAGGTCTGCTAATATCAA  67

Query  60   GTGAAGGAGCTTGAAATGGCAACAGTTCCAGGACAGCTGATCTGGGAGATCGTGAAGAGA  119
            ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct  68   GTGAAGGAGCTCGAAATGGCCACAGTTCCAGGACAGTTGATCTGGGAGATCGTGAAGAGA  127

Query  120  AACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAACGCTAAGGTTCAATTCAGCAAA  179
            |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct  128  AACAACTGTTTCTTGGTGAAGCAATTCGGTAGAGGTAATGCCAAGGTTCAGTTCAGCAAA  187

Query  180  GAGACCAACAACCTCGTCAACATCAACTCTTACAAGCACTCTGGTTTGGCTAACAAAAAG  239
            |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  188  GAGAGCAACAACCTCGTCAACATCAACTCGTACAAGCACTCTGGTTTGGCCAACAAAAAG  247

Query  240  ACGGTGACTATTCAGGCTGCTGACAAGGACCAATGTGTGGTACTCGGAACCACCAAGACC  299
            || ||||| |||||||| |||| |||||||||| |||| |||||||||||||||||||| 
Sbjct  248  ACAGTGACCATTCAGGCGGCTGGCAAGGACCAAGGTGTTGTACTCGGAACCACCAAGACT  307

Query  300  AAGAAACAAAACAAGCCTAAGCTCTCTGTTAACAAGTCTGTTCTCAAGAAGGAGTT-TCC  358
            |||| |||||||||||||||||||||||||||||||||| | |||||||||||||| || 
Sbjct  308  AAGAGACAAAACAAGCCTAAGCTCTCTGTTAACAAGTCTATCCTCAAGAAGGAGTTCTCG  367

Query  359  CAGGATGACG-AAAGCTGTTGCCAATCAGGTGGTGGACAACTACTACAGGCCTGATTTGA  417
             ||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  368  -AGGATGA-GTAAAGTTGTTGCCAATCAGGTAGTGGACAACTACTACAGGCCTGATTTGA  425

Query  418  AGAAAGCAGCACTTGCTAGACTCAGCGCTATCAGCAAAGGTCTTAGAGTCGCAAAGTCTG  477
            ||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| |
Sbjct  426  AGAAAGCAGCACTTGCTAGGCTTAGCGCTATCAGCAAAGGTCTTAGAGTAGCCAAGTCGG  485

Query  478  GTCCCAAGAGGAGAAACAGACAAGCTTGAAGAATCCACT  516
            |||||||||||||||||||||| ||||||||||||||||
Sbjct  486  GTCCCAAGAGGAGAAACAGACAGGCTTGAAGAATCCACT  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25920819852


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5