BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491823
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29330.1 | Symbols: DER1 | DERLIN-1 | chr4:14444819-14447115... 1568 0.0
> AT4G29330.1 | Symbols: DER1 | DERLIN-1 | chr4:14444819-14447115
FORWARD LENGTH=1082
Length=1082
Score = 1568 bits (849), Expect = 0.0
Identities = 972/1030 (94%), Gaps = 13/1030 (1%)
Strand=Plus/Plus
Query 1 TATATCGGATATCGAATCTTGAATCGGACTCAGAACTTCCGGATCTTGGAAAATCGAAGA 60
|||||||||| ||||||||||||||||||||||||| | |||||||| ||||||||| ||
Sbjct 58 TATATCGGATCTCGAATCTTGAATCGGACTCAGAACCT-CGGATCTTCGAAAATCGACGA 116
Query 61 ACATGTCTTCTCCTGGCGAATACTATAACTCACTTCCACCAATAACCAAGGCTTATGGTA 120
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 117 ACATGTCTTCTCCTGGCGAATTCTATAACTCACTTCCACCTATAACCAAGGCTTATGGTA 176
Query 121 CGTTGTGCCTTTTCACTACTA-TAGCCAAC-CAGCTTGGCTTGGTTGCTCCTGTCCACAT 178
|||||||| |||||||||| | ||||| || ||||||||||| |||||||| || |||||
Sbjct 177 CGTTGTGCTTTTTCACTAC-AGTAGCC-ACGCAGCTTGGCTTAGTTGCTCCCGTTCACAT 234
Query 179 TGCTTTATTTCCTCAACTTGTACTTAAGCAGTTCCAGATCTGGAGGCTGATATCAAACTT 238
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 235 TGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGATCTGGAGGCTGATAACAAACTT 294
Query 239 CTTTTTCCTCGGTGGTTTCTCTATCAATTTCGGAATACGTCTTTTGATGATAGCAAGATA 298
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 295 GTTTTTCCTCGGTGGTTTCTCTATCAATTTTGGAATACGTCTTTTGATGATAGCAAGATA 354
Query 299 TGGAGTTCAACTCGAGAAAGGGCCGTTTGAAAGGCGGACGGCAGACTTTTTGTGGATGAT 358
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 355 TGGAGTTCAACTCGAGAAAGGGCCATTTGAAAGGCGGACAGCAGACTTTTTGTGGATGAT 414
Query 359 GATCTTTGGATCCTTCACTCTATTGGTTTTATCAGTCATACCATTTTTCTGGGCGCC-TT 417
||||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||
Sbjct 415 GATCTTTGGATCCTTCACTCTATTGGTATTATCAGTCATACCATTTTTCTGGACACCGTT 474
Query 418 TCCTTGGAGTTTCGCTTGTGTTCATGCTTCTATATCTCTGGAGCCGGGAATTTCCAAATG 477
| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 475 T-CTTGGTGTTTCACTTGTGTTCATGCTTCTTTATCTCTGGAGCCGAGAATTTCCAAATG 533
Query 478 CCAACATCAGCCTATACGGTCTTGTCACTCTCAAGGCTTTCTACCTCCCATGGGCAATGC 537
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 534 CCAACATCAGCCTATACGGTCTTGTCACTCTTAAGGCTTTCTACCTCCCATGGGCAATGC 593
Query 538 TAGCACTCGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCCG 597
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 594 TAGCACTTGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCTG 653
Query 598 GACATCTATACTACTTCCTTACAGTCCTCCATCCTCTTGCCACCGGAAAAAACTACCTGA 657
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 654 GACATCTATACTACTTCCTAACAGTCCTTCATCCTCTTGCTACCGGAAAAAACTACCTGA 713
Query 658 AAACCCCAAAATGGGTTAATAAAATCGTAGCGAGATGGCGAATTGGAGCTCCGGTAGCAA 717
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 714 AAACCCCAAAATGGGTTAATAAAATCGTAGCAAGATGGCGAATTGGAGCTCCAGTTGCAA 773
Query 718 GTGTTCGACAAGCAGGTGGTGTaggagcagcaggacccggagctggaggaggagtaggag 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GTGTTCGACAAGCAGGTGGTGTAGGAGCAGCAGGACCCGGAGCTGGAGGAGGAGTAGGAG 833
Query 778 gaggaggagcTTATTCAAGCGCTCGTGCCCCACCAGAGAGTTCAAACACAGCATTCAGAG 837
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 834 GAGGAGGAGCTTATTCAAGCGCTCGTGCCCCACCCGAGAGTTCAAACACAGCATTCAGAG 893
Query 838 GTCGATCATATCGTCTCACCGATTGAAATAGAAATTTTCTTGCGTTTCGTTGTTTCCAT- 896
|||||||||||||||||||||| |||||||||||| |||| | ||||| |||||| |||
Sbjct 894 GTCGATCATATCGTCTCACCGACTGAAATAGAAATCTTCTCGAGTTTCTTTGTTTTCATC 953
Query 897 A-ATCCTAAATGTTTTTCAAACAATGCCACTAAC-AAGTCTCAGGTAGCTTTGTGTTTTC 954
| ||| |||| |||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 954 ATATC--AAATCTTTTTCAAACAATGCCACTAACTAA-TCCCAGGTAGCTTTGTGTTTTC 1010
Query 955 GAGCAGTACAGTTTTTGAATATATGACTTTGTAGGAAGAATCTTTGAGGTTTTAATACAA 1014
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1011 GAACAGTACAGTTTTTGAATATATGACTCTGTAGGAAGAATCTTTGAGGTTTTAATACAA 1070
Query 1015 TGTTGTTTTC 1024
|||| |||||
Sbjct 1071 TGTTCTTTTC 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5