BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491825 Length=376 Score E Sequences producing significant alignments: (Bits) Value AT4G29300.1 | Symbols: LCR27 | low-molecular-weight cysteine-ri... 494 3e-139 > AT4G29300.1 | Symbols: LCR27 | low-molecular-weight cysteine-rich 27 | chr4:14433991-14434524 REVERSE LENGTH=421 Length=421 Score = 494 bits (267), Expect = 3e-139 Identities = 346/383 (90%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 1 TATTTTACAAACACTGGTAACTTTTGTTTTGTAATATTGATCAATGGCGAAGTTATCCTT 60 |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| | Sbjct 1 TATTTTACAAACACTGATAACTTTTGTTTTCCAATACTGATCAATGGCGAAGTTATCATG 60 Query 61 TTCTTAT-TTCCTTGTACTT-ATGCTCGTGCTCTCAGCTTTTTTAATGGTTGAGAGAGTT 118 ||||||| || |||||| || ||||| ||| |||||||| ||||||||||||| | |||| Sbjct 61 TTCTTATCTT-CTTGTA-TTCATGCTAGTGTTCTCAGCTATTTTAATGGTTGAAAAAGTT 118 Query 119 GAGGGAAAGCAATGTCGTTTGATTATTTACAAAGCAACTGCATGTTC-TCTTAGCGATTG 177 |||||| || |||||||||| | ||| ||||||||||| |||| || |||||| ||||| Sbjct 119 GAGGGAGAGGAATGTCGTTTAACGATTGACAAAGCAACTCCATG-TCATCTTAGTGATTG 177 Query 178 TCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAGTGTTTTGATGATCCAAATGT 237 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 178 CCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAATGTTTTGATGATCCTAATGT 237 Query 238 TCCTGGACCTGATAACTGTGGTTGTCTCTATAATTGTTAGAGCTACTATTTTATAATTGA 297 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 238 TCCTGGACCTGATAACTGTGGTTGTCGCTATAATTGTTAGAGCTACTATTTTATAATTGA 297 Query 298 TATGATATTATAAGTATTTGATTTTCTTA-TCCGATATGAATAAATTGCAGAGATT-T-T 354 |||| ||| ||||||||| ||||||| || |||||||||||||||||||||||||| | | Sbjct 298 TATGGTATAATAAGTATTCGATTTTCATAATCCGATATGAATAAATTGCAGAGATTATAT 357 Query 355 -AATTACTTTATTGTTAATCTTT 376 |||||||||||||||||||||| Sbjct 358 TAATTACTTTATTGTTAATCTTT 380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17694247648 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5