BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491825
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29300.1 | Symbols: LCR27 | low-molecular-weight cysteine-ri... 494 3e-139
> AT4G29300.1 | Symbols: LCR27 | low-molecular-weight cysteine-rich
27 | chr4:14433991-14434524 REVERSE LENGTH=421
Length=421
Score = 494 bits (267), Expect = 3e-139
Identities = 346/383 (90%), Gaps = 10/383 (3%)
Strand=Plus/Plus
Query 1 TATTTTACAAACACTGGTAACTTTTGTTTTGTAATATTGATCAATGGCGAAGTTATCCTT 60
|||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
Sbjct 1 TATTTTACAAACACTGATAACTTTTGTTTTCCAATACTGATCAATGGCGAAGTTATCATG 60
Query 61 TTCTTAT-TTCCTTGTACTT-ATGCTCGTGCTCTCAGCTTTTTTAATGGTTGAGAGAGTT 118
||||||| || |||||| || ||||| ||| |||||||| ||||||||||||| | ||||
Sbjct 61 TTCTTATCTT-CTTGTA-TTCATGCTAGTGTTCTCAGCTATTTTAATGGTTGAAAAAGTT 118
Query 119 GAGGGAAAGCAATGTCGTTTGATTATTTACAAAGCAACTGCATGTTC-TCTTAGCGATTG 177
|||||| || |||||||||| | ||| ||||||||||| |||| || |||||| |||||
Sbjct 119 GAGGGAGAGGAATGTCGTTTAACGATTGACAAAGCAACTCCATG-TCATCTTAGTGATTG 177
Query 178 TCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAGTGTTTTGATGATCCAAATGT 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 178 CCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAATGTTTTGATGATCCTAATGT 237
Query 238 TCCTGGACCTGATAACTGTGGTTGTCTCTATAATTGTTAGAGCTACTATTTTATAATTGA 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 TCCTGGACCTGATAACTGTGGTTGTCGCTATAATTGTTAGAGCTACTATTTTATAATTGA 297
Query 298 TATGATATTATAAGTATTTGATTTTCTTA-TCCGATATGAATAAATTGCAGAGATT-T-T 354
|||| ||| ||||||||| ||||||| || |||||||||||||||||||||||||| | |
Sbjct 298 TATGGTATAATAAGTATTCGATTTTCATAATCCGATATGAATAAATTGCAGAGATTATAT 357
Query 355 -AATTACTTTATTGTTAATCTTT 376
||||||||||||||||||||||
Sbjct 358 TAATTACTTTATTGTTAATCTTT 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5