BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491827
Length=434
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29285.1 | Symbols: LCR24 | low-molecular-weight cysteine-ri... 641 0.0
AT4G13095.1 | Symbols: LCR37 | low-molecular-weight cysteine-ri... 257 5e-68
> AT4G29285.1 | Symbols: LCR24 | low-molecular-weight cysteine-rich
24 | chr4:14431526-14432290 FORWARD LENGTH=435
Length=435
Score = 641 bits (347), Expect = 0.0
Identities = 407/436 (93%), Gaps = 4/436 (1%)
Strand=Plus/Plus
Query 1 ATTTCTCTATACCATTTTCAATATCAAAAAGTTTCTTCAAACAAACAAGTATTAGATTAA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTCTCTCTACCATTTTCAATATCAAAAAGTTTCTTCAAACAAACAAGTATTAGATTAA 60
Query 61 CACTATCTTCTTAATTTTCAGAAATTCATGGCTAAACTATTATGTTCGTATCTATTCATC 120
|| |||| |||| |||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 61 CATTATCCTCTTCATTTTCAGCAATTCATGGCTAAACTAATATATTCGTATCTATTCATC 120
Query 121 TCCATGTTTGTTCTCTCAGtttttttGGCTTTGCCAAATGCAGAGGGAGCGAATATAAAA 180
||||||||||||||||||||| ||||||| |||||||||||||| |||||| |||| |||
Sbjct 121 TCCATGTTTGTTCTCTCAGTTCTTTTGGCGTTGCCAAATGCAGAAGGAGCGGATATTAAA 180
Query 181 AGATGTGTTGTGGACGTGAAGCTTAGCAAGCCATGCACTTTTCAAGAATGCATACCACTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGATGTGTTGTGGACGTGAAGCTTAGCAAGCCATGCACTTTTCAAGAATGCATACCACTT 240
Query 241 TGTTTTCAAAAGTACAACGGGAATGGCGTTTGTACCGGAAATAAAAACCAAATTTGCACT 300
|||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 241 TGTTTTCAAAGGTACAATGGGAATGGCGTTTGTACCGGAAAGAAAAACGAAATTTGCACT 300
Query 301 TGCGCTTACAACTGTTAAGCTA-A-TATGTTTGTTAAACTAGACCAAAAATCTTTAATGT 358
||||| ||||| |||||||||| | |||||| |||| ||||||||||||||||||||||
Sbjct 301 TGCGCCTACAATTGTTAAGCTATAATATGTT-GTTAG-CTAGACCAAAAATCTTTAATGT 358
Query 359 TATGGTGCCTTAATAATCCTTGACTTCATGTATTTGGAGAATATGATAATATGAATAAAG 418
|||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 359 TATGGTGCCTTAGTAATCCTTGACTCCATGTATTTGGAGGATATGATCATATGAATAAAG 418
Query 419 ATCTATTAAATATTCT 434
|||| |||||| ||||
Sbjct 419 ATCTTTTAAATTTTCT 434
> AT4G13095.1 | Symbols: LCR37 | low-molecular-weight cysteine-rich
37 | chr4:7634993-7635483 FORWARD LENGTH=234
Length=234
Score = 257 bits (139), Expect = 5e-68
Identities = 205/236 (87%), Gaps = 7/236 (3%)
Strand=Plus/Plus
Query 88 ATGGCTAAACTATTATGTTCGTATCTATTCATCTCCATGTTTGTTCTCTCAGtttttttG 147
||||| |||| ||| ||||| ||| | ||||||||||||||| ||||||||| |||||||
Sbjct 1 ATGGCCAAACAATTGTGTTCTTATATGTTCATCTCCATGTTTATTCTCTCAGCTTTTTTG 60
Query 148 GCTTTGCCAAATGCAGA--G-GGAGCGAATATAAAAAGATGTGTTGTGGACGTGAAGCTT 204
|||||||||| |||||| | ||||||| |||||||| |||||||||||||||||| |||
Sbjct 61 GCTTTGCCAAGTGCAGAGGGAGGAGCGACTATAAAAAAATGTGTTGTGGACGTGAAACTT 120
Query 205 AGCAAGCCATGCACTTTTCAAGAATGC-ATACCACTTTGTTTTCAAAAGTACAACGGGAA 263
||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||
Sbjct 121 AGCAAGCCATGCACTTTTCAAGAATGCCA-ACCACTTTGTCTTCAAAAGTATAACGGGAA 179
Query 264 TGGCGTTTGTACCGGAAATAAAAACCAA-ATTTGCACTTGCGCTTACAACTGTTAA 318
|||| ||||| ||||| || | ||| || |||||| |||| | |||||| || |||
Sbjct 180 TGGCCTTTGTCCCGGAGATGACAAC-AATATTTGCGCTTGTGTTTACAATTGCTAA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20609777090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5