BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491828
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29280.1 | Symbols: LCR22 | low-molecular-weight cysteine-ri... 296 6e-80
> AT4G29280.1 | Symbols: LCR22 | low-molecular-weight cysteine-rich
22 | chr4:14427901-14428265 REVERSE LENGTH=234
Length=234
Score = 296 bits (160), Expect = 6e-80
Identities = 214/239 (90%), Gaps = 8/239 (3%)
Strand=Plus/Plus
Query 1 ATGGCCAAAATATCATGTTCTTATTTCTTCATACTCATGTTTGTGTTCTCAGCTTTTGT- 59
||||| || ||||||||||||| ||||||| |||||||| | ||||| |||| |||| |
Sbjct 1 ATGGCTAAGATATCATGTTCTTCTTTCTTCGTACTCATGCTAGTGTTTTCAG-TTTTTTC 59
Query 60 ATTGGTTGAGAAGGTTAAGGGAGATGAACGTTGTACTATAATCATTCATCCAGGATCTCC 119
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 ATTGGTTGAGAAGGCTAAAGGAGATGAACGTTGTACCATAATCATTCATCCAGGATCTCC 119
Query 120 ATGTGACCCTCCTGATTGTCG-TCTA-TACTGTTTTGCGGAATACAATGGAGTTGGAGAA 177
|||||||||| |||||||| | || | ||||| | |||||| ||||||||||||||| ||
Sbjct 120 ATGTGACCCTTCTGATTGT-GTTC-AGTACTGCTATGCGGAGTACAATGGAGTTGGAAAA 177
Query 178 TGTATTGCATCCAAACCTGGTAGAACTGCTAATTGTATGTGTGTACTTATAATTGTTAA 236
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 178 TGTATTGCATCCAAACCTGGTAGAAGTGCTAATTGTATGTGT--ACTTATAATTGTTAA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5