BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491830
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29260.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1260 0.0
AT4G29270.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 425 3e-118
> AT4G29260.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:14422152-14423603 REVERSE LENGTH=1120
Length=1120
Score = 1260 bits (682), Expect = 0.0
Identities = 790/840 (94%), Gaps = 16/840 (2%)
Strand=Plus/Plus
Query 89 TTG-GAAACGATAACC-ATCCAATGAATGGGAGACAGATCATTATCTCTTTCTCTAAATC 146
||| |||||||||||| || ||| |||||||||| |||||||||||||| ||||||||
Sbjct 133 TTGCGAAACGATAACCAAT--AATAAATGGGAGAC--ATCATTATCTCTTTTTCTAAATC 188
Query 147 TCTCCAATGGCGTCTCTTCGCAGCCTTTCGATTTGG---ttcttcttc-t--tcttcgtc 200
|||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||
Sbjct 189 TCTCCAATGGCGTCTCTTCGTAGCCTTTCGATTTGGTTCTTCTTCTTCTTCGTCTTCGTC 248
Query 201 ttcttAATCAATCCCTCCATTTCTATTCGCACTTCCTTCATCAAGCTCCCCACAAGCGAC 260
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 249 TTCTTAATCAATCCCTCCATTTCTATTCGAACTTCCTTCATCAAGCTTCCCGGAAGCGAC 308
Query 261 GGATCTCGCTACTGCGACAGCTGGAGATTAGCCGCCGAGACCAACAACGCCGGAACCTGG 320
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 309 GGATCTCGCTACTGCGACAGCTGGAGATTAGCCGCCGAGACCAATAACGTCGGAACTTGG 368
Query 321 GATGTGATTCCGTCAATTTGCGTGGATTCCGTCGCCGAGTATCTTAACGGATACCAGTTC 380
||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 369 GATCTGATTCCGTCAATCTGCGTGGATTCCGTCGCCGAGTATCTTAACGGAGACCAGTTT 428
Query 381 CGATCAGATTACGA-TGTCATCGTCGATTATGCGCTCGCGTTTGCGAAATCGGTTGAAAT 439
||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 429 TTATCCGATTAC-AGTGTCATCGTCGATTATGCTCTCGCGTTTGCGAAATCGGTTGAAAT 487
Query 440 CTCCGGCGACGGTAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATAT 499
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTCCGGCGACGGCAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATAT 547
Query 500 TGACTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAGTTTTAGTGA 559
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 548 TGACTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGA 607
Query 560 GTGGGTGGAACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GTGGGTGGAACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCT 667
Query 620 AAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGGATCAAAGGAGTTC 679
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 668 CAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGCATCAAAGGACTTC 727
Query 680 CACCGAGACAAATCTCCGCGATGCCGGTTATTCCGGTTGGGAACGTCTCCTCTTGAGAGG 739
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CACCGAGACAAATCTCCGGGATGCCGGTTATTCCGGTTGGGAACGTCTCCTCTTGAGAGG 787
Query 740 TCCAAATGATCAAGGGAAATCAGCTACAAATTACAAATCTGAGCAGCGATCGAAACTAAT 799
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 788 TCCAAATGATCAAGGGAAGTCAGCTACAAATTACAAATCCGAGCAGCGATCGAAACTGAT 847
Query 800 TGAGGAAGGTTTCAAAATCCGTGGCAATTCCGGTGATCAATGGAGCGATCTT-CTAGGTT 858
|||||||||||||||||||||||||||| ||||||||||||||| || ||| | |||||
Sbjct 848 TGAGGAAGGTTTCAAAATCCGTGGCAATAGCGGTGATCAATGGAGTGA-CTTGCAAGGTT 906
Query 859 TTGCCGTGGCTGATCGGTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGATCAC 918
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTGCCGTGGCTGATCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGATCAC 966
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 58 ATTCTACTAACTAATTAACTAATTAAAGTTTTTGG 92
||||| |||||||||||||||||||||||||||||
Sbjct 87 ATTCTGCTAACTAATTAACTAATTAAAGTTTTTGG 121
> AT4G29270.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr4:14423662-14424882 REVERSE LENGTH=940
Length=940
Score = 425 bits (230), Expect = 3e-118
Identities = 403/485 (83%), Gaps = 18/485 (4%)
Strand=Plus/Plus
Query 443 CGGCGACGGTAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGA 502
||| ||||| ||||||| |||| |||| || ||||| |||||||||||| | ||||||||
Sbjct 334 CGGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGA 393
Query 503 CTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGA-TAATAGTTTTAGTGA-G 560
|||||||||||| |||||||||||||||||||||| || | || || | | ||| |
Sbjct 394 GTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGA-TAGTATTAAATACAATGAGG 452
Query 561 TGGGTGGAACAAGGAACAG-CTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCT 619
| ||||||| |||||| || | |||| || ||||||||||||||| || ||||| |||||
Sbjct 453 T-GGTGGAAAAAGGAAAAGAC-CCAGGTTATGATGCGAGCTTGAGGCTCTACAAAGCTCT 510
Query 620 AAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACG-AGGATCAAAGGAGT- 677
|||||||||||||||||||||||||| ||||| || || |||| ||| ||| || |||
Sbjct 511 CAAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGAAGG-TCATAGAAGTG 569
Query 678 TCCACCGAGACAAATCTCCGCGATGCCGGTTATTCCGGTTGGGAA-CGTCTCCTCTTGAG 736
| |||||||| |||||| || ||||||||||||| ||||| |||| || |||||||||||
Sbjct 570 T-CACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTT-GGAACCGACTCCTCTTGAG 627
Query 737 AGGTCCAAATGATCAAGGGAAATCAGCTACA-AATTACAAATCTGAGCAGCGATCGA-AA 794
|||| |||||||||||||||| |||| ||| || |||||||| ||||||||||| | ||
Sbjct 628 GGGTCAAAATGATCAAGGGAAAACAGCAACACAA-TACAAATCAGAGCAGCGATC-ACAA 685
Query 795 CTAATTGAGGAAGGTTTCAAAATCCGTGGCAATTCCGGTGATCAATGGAGCGATCTT-CT 853
| | | ||||| | || ||||| ||| ||| | || ||||||||||| || ||| ||
Sbjct 686 GTTGTAAAAGAAGGCTACACAATCCATGGTAATACTGGAGATCAATGGAGTGA-CTTGCT 744
Query 854 AGGTTTTGCCGTGGCTGATCGGTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTG 913
|||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||
Sbjct 745 AGGTTTTGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTACTATGTTGCTTG 804
Query 914 ATCAC 918
|||||
Sbjct 805 ATCAC 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5