BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491831
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29250.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2187 0.0
> AT4G29250.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr4:14420689-14422281 FORWARD LENGTH=1511
Length=1511
Score = 2187 bits (1184), Expect = 0.0
Identities = 1405/1512 (93%), Gaps = 14/1512 (1%)
Strand=Plus/Plus
Query 1 AACCAAAGAATAAAACAAAAC-AAAATTTGATTGCTAAAGAGAAGACAATGATGGAGGAG 59
||||||||||||| || ||| |||| || ||||||||||||||||||| |||||||||
Sbjct 1 AACCAAAGAATAATAC--AACGAAAA-ATGTTTGCTAAAGAGAAGACAATAATGGAGGAG 57
Query 60 GACCGCGTGAGATTCATATGCAAAAGAACCGTGGTCAGCACTAGATCGATTGAACCAGGG 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 58 GACCGCGTGAGATTCATATGCAAAAGAACCGTGGTGAGCACTAGATCGATTGAACCAGGG 117
Query 120 CGATTATACCGGTTTTCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTG 179
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGATTATACCAGTTATCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTC 177
Query 180 TACTATTACCGGTCTTTGAAGACTAGAGAACCGGGAGAAATCACaaaaaaaTTAAGGGAG 239
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TACTATTACCGGTGTTCCAAGACTAGAGAACCGGGAGAAATCACAAAAAAATTAAGGGAG 237
Query 240 TCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGATTGGTTAGGGAAAAT 299
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 238 TCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGACTGGTTAAAGAAGTT 297
Query 300 GATGGT-TCGGAAGAGCAGGAGGATGTAAGCCGACGGTGGAAGGTGAAGAGCAACGACGC 358
|||||| | ||||||| | ||||| |||||| ||| |||| ||| ||||||||||||||
Sbjct 298 GATGGTAT-GGAAGAGAATAAGGATTTAAGCCAACGATGGATGGTAAAGAGCAACGACGC 356
Query 359 TGGCATGAGGATGGTGGAGGCGAGAGCAACCGGGTCGGTTGAA-GAATGGCTTAGGAGTG 417
||| |||||||||||||||| |||||||||||||| ||| || ||||||||||||||||
Sbjct 357 CGGCGTGAGGATGGTGGAGGCCAGAGCAACCGGGTCAGTT-AAGGAATGGCTTAGGAGTG 415
Query 418 TAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGGCATGTATCATCTTCATTATT 477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 416 TAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGACATGTATCATCTTCAATATT 475
Query 478 ATTGGTCTACCTTTTGTGTTCAGGTGACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGGT 537
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 476 ATTGGTCTACCTTCTGTGTTCAGGTAACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGAT 535
Query 538 TAAGCTGTAGCCATCTCTTAGCGGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGG 597
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 536 TGAGTTGTAGCCATCTCTTAGCCGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGG 595
Query 598 CAGATCTAACTCTGTCTCGATCCATGATGGCTCCTCCACTATTCCACCCGCTGCCGCCTC 657
||||| ||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 596 CAGATTTAACTTTGTCTCGGTCCATGATGGCTCCACCACTATTCCACCCGTTGCCGCCTC 655
Query 658 GCCGGTTTGCCAACCATAA-ACTAATCTCTAACAACCAACTGCTTAGTCATTACATCAAA 716
|||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 656 GCCGGTTTTCCAACCA-AAGACTAATCTCTAACAACCAACTGCTTAGCCATTACATCAAA 714
Query 717 TCTTGCACTCTAACGGCTTCACCATCAAACGTGACCGAGGACCATATGGTCACTGTTACT 776
|||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 715 TCTTGCTCTCTAACGGCTTCACCGTCAAACATGACCGAGGACCATATGGTCACCGTTACT 774
Query 777 TTTCTATTCCCGGATCCCCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTT 836
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTTCTGTTCCCGGATCCGCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTT 834
Query 837 GAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAGAGAAACGAG 896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 GAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAAAGAAACGAG 894
Query 897 CTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTATTGCGTTTAGACCAAGGTTAT 956
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 895 CTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTGTTGCGTTTAGACCAAAGTTAT 954
Query 957 TTTGGCAATTGCATGGTTTATCACAAGGTTCCCTATTCCAAACCAGTTAAAACCAAAGAT 1016
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 955 TTTGGTAATTGCATGGTTTATCACAAGGTTCCCTACTCCAAACCGGTTAAAACCAAAGAT 1014
Query 1017 AAATTGTTATTTCACGCTGTTCAAGAGATTGAGAACATAACCAAGAAACTAGACTACGAC 1076
||| | ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1015 AAACTCTTATTCCACGCTGTTCAAGAGATTGAGAGCATAACCAAGAGACTAGACTACGAC 1074
Query 1077 ACGGTCATGGACTTGATCGAATGGCTGAGTAGCAATAACGGTGCGATATCTAATGGCTCT 1136
||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||| ||
Sbjct 1075 ACGGTCATGGACTTGATTGAGTGGTTGAGTAGCAATAACGGTGCGATATCAAATGGTTCG 1134
Query 1137 GATCTCGTGTGTACTAATTTAGAGAACATGTCTCATTCACGTCCGATGATGTTCGAGGAG 1196
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 GATCTCGTGTGTACTAATTTAGAAAACATGTCTCATTCACGTCCGATGATGTTCGAGGAG 1194
Query 1197 GATTTGGTTCTGAGCCACTTGTCTTGCTGTGTAAAAGGGCCTGTAGCTGGAGGTGGACAG 1256
||||||| |||||||||| | ||||||| |||| ||||||||||||||||||||||||||
Sbjct 1195 GATTTGGCTCTGAGCCACGTATCTTGCTATGTAGAAGGGCCTGTAGCTGGAGGTGGACAG 1254
Query 1257 GTCATAGTGCTTCCCTCACTGCCCGGTAAGGGACCAATGAGCCGAGTGGTTATGGTCAGT 1316
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1255 GTCATAGTGCTTCCCTCACCGCCCGGTAAGGAACCAATGAGCCGAGTGGTTATGGTCAGT 1314
Query 1317 CTTCCTCAAAGAGAGATGGTTAAGGT-AGTAGAAGATGAGCTTCTTCTAAGCTTTTCTCC 1375
||||||||||||| |||||||||||| | ||||||| ||||||||| |||||||||||||
Sbjct 1315 CTTCCTCAAAGAGTGATGGTTAAGGTTA-TAGAAGACGAGCTTCTTTTAAGCTTTTCTCC 1373
Query 1376 GGTTGTAGTTATGGAAAATACCGAA-CAAATATAATTTTACATTATATGAAAGTATTAGT 1434
||| ||| |||||||| |||| || ||| ||||||| ||| ||||||||||||||||||
Sbjct 1374 GGTCGTAATTATGGAAGATACA-AAGCAATTATAATTATACTTTATATGAAAGTATTAGT 1432
Query 1435 TATTGTTTATACTAAAAATAAATGTAATCTAGGAGCAAACATGATATTAATGTCTAAAAC 1494
|| ||||||||||||| || |||||||| |||||||||| | ||||||| |||||||||
Sbjct 1433 TAATGTTTATACTAAAGATCAATGTAATATAGGAGCAAAGGTAATATTAACGTCTAAAAC 1492
Query 1495 ACATAAGTTGTT 1506
|||||||| |||
Sbjct 1493 ACATAAGTGGTT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5