BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491836
Length=2122
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29210.1 | Symbols: GGT3, GGT4 | gamma-glutamyl transpeptida... 2920 0.0
AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:1440... 185 1e-45
> AT4G29210.1 | Symbols: GGT3, GGT4 | gamma-glutamyl transpeptidase
4 | chr4:14400932-14403519 FORWARD LENGTH=2172
Length=2172
Score = 2920 bits (1581), Expect = 0.0
Identities = 1984/2168 (92%), Gaps = 69/2168 (3%)
Strand=Plus/Plus
Query 1 CTAGATCGAAAGGGAAAA-GAGAT----A--GAAGATGGGTGACGCAATCATCGCCGATC 53
|||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||
Sbjct 24 CTAGATCGAAAGGGAAAAGGAGATAGAGATTGAAGATGCGTGACGCAATCATCGCCGATC 83
Query 54 CTCTTCTGTG-CATCGACCATCAAACAGTCGCagagaagaagaagaagaagCAGAGCAAC 112
|||||||| | |||||||||| |||||||||| || |||||||| | || ||||||||
Sbjct 84 CTCTTCTG-GCCATCGACCATGAAACAGTCGC--AG-AGAAGAAG-A-AA-CAGAGCAAA 136
Query 113 TATCTAAAGCTTGCTCTTTTTCTGCTTCTTCTGATTCT-TGTAGCAACTTCAGG-T-TT- 168
|||||||| || ||||||| ||| ||||||||||| | ||||||||||||| | ||
Sbjct 137 AATCTAAAGATTTCTCTTTTACTG---CTTCTGATTCTCT-TAGCAACTTCAGGTTATTA 192
Query 169 TAGCTTTAATGACAAGAGTACAACAGTTTTGTTATCAAGACAAGCAATTCATGATGATCA 228
|||||||| |||||| | |||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 193 TAGCTTTAGTGACAACATTACAACAGTTTTCTTATCAAGACAAGCTATTGATGATGATCA 252
Query 229 TAGTCTTAGCCATGGAACCGTCAGTGACATGGTTGAATCAGAGAATGGTGTTGTGGCTGC 288
||||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 253 TAGTCTTAGCCTTGGAACCATCAGTGACGTGGTTGAATCTGAGAATGGTGTTGTGGCTGC 312
Query 289 TGACGACGCTCGATGCTCCGAGGTCGGTGCCTCTGTTCTTAGAAGAGGCGGCCACGCGGT 348
||||||||||||||| |||||| |||||||||||||||||||||| ||||| || |||||
Sbjct 313 TGACGACGCTCGATGTTCCGAGATCGGTGCCTCTGTTCTTAGAAGTGGCGGTCATGCGGT 372
Query 349 GGATGCCGCCGTGGCTATTACTTTATGTGTTGGTGTTGTTAATCCAATGTCGAGTGGAAT 408
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 373 GGACGCCGCCGTGGCTATTACTTTATGTGTTGGTGTTGTTAATCCAATGTCTAGTGGAAT 432
Query 409 CGGTGGTGGTTCTTTCTTGATTGTTAGCTCGCAGAAAGATTCCAAAGTTGAGGCTTTTGA 468
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 433 CGGTGGTGGTTCTTTCTTGATTGTTAGCTCGCAGAAAGATTCCAAAGCTGAGGCTTTTGA 492
Query 469 CATGAGAGAAACTGCTCCATTAGCTGCTTCTAAGGATATGTATAAGAATGATGCGAGTGC 528
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 493 CATGAGAGAAACTGCTCCATTAGCTGCTTCTAAGGATATGTATAAGAACGATGCTAGTGC 552
Query 529 GAAATCGTTGGGGGCATTGTCGATGGGAGTTCCGGGAGAGATAGCTGGACTTTACGAGGC 588
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 553 GAAATCGTTGGGCGCATTGTCTATGGGAGTTCCGGGAGAGATAGCTGGACTTTACGAGGC 612
Query 589 TTGGAAACGGTATGGCCGTCTCTC-GTGGAAACCGCTTTTCGAGCCGGCGATTGAGTTGG 647
||||||||||||||||||||| || |||||||||||||||||||||||| ||| || |||
Sbjct 613 TTGGAAACGGTATGGCCGTCT-TCCGTGGAAACCGCTTTTCGAGCCGGCTATTAAGCTGG 671
Query 648 CTCGAGG-CGGGTTT-GTGGTGCATCCGTATCTTGGAAAGGCCATATCGAGCCAC-GCTG 704
|||| || ||| ||| |||||| |||||||||| |||||||||||||||| ||| | ||
Sbjct 672 CTCG-GGACGG-TTTCGTGGTGTATCCGTATCTCGGAAAGGCCATATCGA-CCAAAGTTG 728
Query 705 CGATGATACTTAAAGATCCGGGTTTGCGGAGTGTCTTCTCAAGAAATGGACAGGTTTTGA 764
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 729 CGATGATACTTAAAGATCCGGGTATGCGGAGTGTCTTCTCAAGAAACGGACAGGTTTTGA 788
Query 765 AACCCGGTGAGACTTGCTATAACCCGGAGCTTGCTCGGAGTCTTGAGACTATTTCTGAGC 824
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 789 AAACCGGTGAGACTTGCTATAACCCGGAGCTAGCTCAGAGTCTTGAGACTATTTCTGAGC 848
Query 825 AAGGACCGGGAGCGTTCTACAACGGGACAGTAGGCGAGAAGCTTGTTAACGATGTGAAAA 884
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 849 AAGGCCCGGGAGCGTTCTACAACGGGACAGTAGGCGAGAAGCTTGTTAAAGATGTGAAGA 908
Query 885 AGGCGGGAGGGATCATAACGATGGATGATCTAAGAAGTTATGAAG-TCCGAGTGACCGAT 943
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 909 AGGCGGGAGGGATCATAACGATGGATGATCTAAGAAGTTAT-AAGGTCCGAGTTACCGAT 967
Query 944 GCAATGTCTGTGGATGTTATGGGTTATACGGTTCACGGAATGCCGCCTCCTTCGGGCGGT 1003
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 968 GCAATGTCTGTGGATGTTATGGGTTATACGGTTCATGGAATGCCGCCTCCTTCGGGCGGT 1027
Query 1004 ACAGTCGGTTTTTCGATGGTTATTGA-TATCTTGGATAGTTATTCGAACCTCTACACTGC 1062
||||||||||||||||||||||| || ||||||||||||||| ||||| || ||||||||
Sbjct 1028 ACAGTCGGTTTTTCGATGGTTAT-GAATATCTTGGATAGTTACTCGAATCTTTACACTGC 1086
Query 1063 TTCTGGAAGAGATCTCGGGCTGCACCGATTGATAGAAGCAATGAAACATATGTTTGCAGC 1122
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1087 TTCGGGAAGAGAGCTCGGGCTGCACCGTTTGATAGAAGCAATGAAACATATGTTTGCAGC 1146
Query 1123 TCGGATGGATCTCGGAGACCCTGGGTTCGTTAACATAACAAACGCTATGAACCAAATGCT 1182
||| |||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1147 TCGTATGGATCTTGGAGACCCTGAGTTCGTTAATGTAACAAACTCTATGAACCAAATGCT 1206
Query 1183 CTCGAAGACTCACGCGGAAGAAATCCGAAAGAGGATTTTCGACAACACGACATTCCCACC 1242
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1207 CTCGAAGGCTCACGCGGAAGAAATCCAAAAGAGGATTTTCGACAACACGACATTCCCACC 1266
Query 1243 CGAGTACTATTTGAACCGGTGGAGCCAACTTAGGGACCAAGGGACAAGTCATTTCTGCAT 1302
||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||| |
Sbjct 1267 TGAGTACTATATGAACCGGTGGAGCCAACTCAGGGACCAAGGAACGAGTCATTTCTGCGT 1326
Query 1303 TGTGGATGCGGATCGAAACAGTGTGTCAATGACCTCAACCGTGAATTACGGTTTTGGTGC 1362
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1327 TGTGGATGCGGATCGCAACAGTGTGTCGATGACCTCAACCGTGAATTACCGTTTTGGTGC 1386
Query 1363 CGGGGTGTTATCACCTTCCACCGGAATTGTACTTAACAACGAGATGGATGATTTCTCTGT 1422
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1387 CGGGGTGTTATCACCTTCAACTGGAATTGTACTTAACAACGAGATGGATGATTTCTCAAC 1446
Query 1423 ACCTGCGGAAATCACTCCCGACAGGCTTCCTCCTGCGCCTACAAATTTCATTGAACCAAA 1482
||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1447 ACCCACGGAAATCACTCCCGACATGCTTCCTCCAGCGCCTACAAATTTCATTGAACCAAA 1506
Query 1483 CAAAAGACCATTATCTTCCATGACACCTCTCGTGGTTACCAAGGATGGTGAGTTCGTGGC 1542
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1507 CAAAAGACCATTATCTTCCATGACACCTCTCGTGATCACCAAGGATGGTGAGTTCGTGGC 1566
Query 1543 AGCGCTTGGAGGAGCTGGCGGAATGCATATAATTCCGGCGGTGCTTCAAGTGTTCCTTAA 1602
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1567 AGCGCTTGGAGGAGCTGGTGGAATGCATATAATTCCAGCGGTGCTTCAAGTGTTTCTTAA 1626
Query 1603 TTGCTTTGTGTTGAATATGAAACCTAAACAAGCAGTAGAGAGTGCCAGAATTTACCATAG 1662
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1627 TTGCTTTGTGTTGAATATGAAACCTAAAGAAGCAGTAGAGAGTGCCAGAATATACCATAG 1686
Query 1663 GTTGATACCGAATGTTGTTTCCTATGAGAACTTCACCGCGATCAATGGCGATCACATAGG 1722
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1687 ATTGATACCAAATGTTGTTTCCTATGAGAACTTCACCACGATCAATGGCGATCACATAGG 1746
Query 1723 GGTTTCAGAAGATACCAAGATGTTTCTGGCTG-GAAGGGGACATGAACTCAAAGCAG-TA 1780
||||||||||||||||||||||||||| || | || | |||||||| || |||| || ||
Sbjct 1747 GGTTTCAGAAGATACCAAGATGTTTCTAGCAGAGA-GAGGACATGAGCT-AAAGGAGCTA 1804
Query 1781 TCAGGTGGAGCTATTGTTCAACTTATTGTTCAGAGTTTCaaggaagaaaaagaagaagag 1840
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1805 TCAGGTGGAGCTATAGTTCAACTTATTGTTCAGAGTTTCAAGGAAGAGAAAGAAGAAGAA 1864
Query 1841 atgattattgaaattggaaggaaaattggaaagaaatcgaaaCCATCCAAGGGCTTACTT 1900
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1865 ATGATTATTGAAATTGGAAGGAAAATCGGAAAGAAATCGAAACCATTAAAGGGCTTACTT 1924
Query 1901 ACTGCAGTTTGTGATCCTCGAAAAGATGGGAAGCCAGCTGCAGTTTGATTTC-T------ 1953
||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1925 ACTGCAGTTAGTGATCCTCGAAAAGATGGAAAGCCAGCTGCAGTTTGATTTCGTTATTAA 1984
Query 1954 -C------C---TT-----ATTCAAGTCCCATTTTATATCATGTAAAGTTGATTAAAGTT 1998
| | || |||||||||||||| | ||||||||||| |||| |||||||
Sbjct 1985 GCTAATTACAAATTTCCTCATTCAAGTCCCATTCTCTATCATGTAAATTTGAATAAAGTT 2044
Query 1999 ATATGAGCTTGAAAGATTGAGTGTGGGATATATACAGAAGCAAAGTTGTAGTTGGAAACA 2058
| |||||| | ||||| | || ||||||||||||||||||||||||||||||||||| ||
Sbjct 2045 ACATGAGCCTCAAAGACTCAGCGTGGGATATATACAGAAGCAAAGTTGTAGTTGGAACCA 2104
Query 2059 AGAGTTATTACATTATTATTCTCACAAGGAGTTATCTCTCT-TCT-CT-TT-GCTTGATG 2114
|||||| |||||||||| |||||||| |||||||||||| ||| || || |||||| |
Sbjct 2105 AGAGTTGTTACATTATT---CTCACAAG-AGTTATCTCTCTCTCTTCTCTTTGCTTGAAG 2160
Query 2115 AATACTAT 2122
|||| |||
Sbjct 2161 AATATTAT 2168
> AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:14403347-14406592
REVERSE LENGTH=2068
Length=2068
Score = 185 bits (100), Expect = 1e-45
Identities = 150/173 (87%), Gaps = 8/173 (5%)
Strand=Plus/Minus
Query 1954 CCTTATTCAAGTCCCATTTTATATCATGTAAAGTTGATTAAAGTTATATGAGCTTGAAAG 2013
||| |||||||||||||| | ||||||||||| |||| |||||||| |||||| | ||||
Sbjct 2068 CCTCATTCAAGTCCCATTCTCTATCATGTAAATTTGAATAAAGTTACATGAGCCTCAAAG 2009
Query 2014 ATTGAGTGTGGGATATATACAGAAGCAAAGTTGTAGTTGGAAACAAGAGTTATTACATTA 2073
| | || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2008 ACTCAGCGTGGGATATATACAGAAGCAAAGTTGTAGTTGGAACCAAGAGTTGTTACATTA 1949
Query 2074 TTATTCTCACAAGGAGTTATCTCTCT-TCT-CT-TT-GCTTGATGAATACTAT 2122
|| |||||||| |||||||||||| ||| || || |||||| ||||| |||
Sbjct 1948 TT---CTCACAAG-AGTTATCTCTCTCTCTTCTCTTTGCTTGAAGAATATTAT 1900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105220342320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5