BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491840
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29170.1 | Symbols: ATMND1 | Mnd1 family protein | chr4:1438... 1338 0.0
> AT4G29170.1 | Symbols: ATMND1 | Mnd1 family protein | chr4:14382839-14385375
FORWARD LENGTH=1086
Length=1086
Score = 1338 bits (724), Expect = 0.0
Identities = 836/890 (94%), Gaps = 8/890 (1%)
Strand=Plus/Plus
Query 1 CCGCTTAAGTTTTCAAGGCTTCTTCAACAATTCTCTCATTTCGAATTTGATagagagaga 60
||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1 CCGCTTAAGTTTTCAAGGCTTCTTCTACAATTCTCTCATTTCGAATTTGATA-A-AGAGA 58
Query 61 gtagagaggagacgat-agtgagagagagagagagagagGTGTAGCAGAGTTTGAAATCC 119
| |||| || | | | || || |||||| ||||||||| |||||||| |||||||||||
Sbjct 59 G--GAGACGATA-G-TGAGGGA-AGAGAGTGAGAGAGAGCTGTAGCAGTGTTTGAAATCC 113
Query 120 TTTGGATTGCATCATCAGAAACAAGAGATCACGATGTCAAAGAAACGGGGGCTTTCGCTG 179
|||||||||||||| ||| | ||||||||||||||||| ||||||||||| |||||||||
Sbjct 114 TTTGGATTGCATCACCAGGAGCAAGAGATCACGATGTCTAAGAAACGGGGACTTTCGCTG 173
Query 180 GAGGAGAAACGGGAGAAGATGCTTCAGATATTCTATGAGTCTCAAGACTTCTTCCTACTT 239
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAGGAGAAACGAGAGAAGATGCTTCAGATATTCTATGAGTCTCAAGACTTCTTCCTACTA 233
Query 240 AAGGAACTTGAGAAGATGGGGCCAAAGAGGGGTGTAATTAGTCAGTCTGTGAAAGATGTT 299
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 234 AAGGAACTTGAGAAGATGGGGCCGAAGAAGGGTGTAATTAGTCAGTCTGTGAAAGATGTT 293
Query 300 ATCCAGAGTTTAGTCGATGATGATCTTGTCGCGAAAGACAAGATTGGAATTTCTATCTAC 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 294 ATCCAGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTATCTAC 353
Query 360 TTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAACTTAGGAGTATCCGTCAGAAACTTGAA 419
|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 354 TTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAACTTAGGAGTGTTCGCCAGAAACTTGAA 413
Query 420 TCTGATCTTCAGGGTAGTAACAAAAGGCTAGCAGAACTTGTTGATCAGTGTGAGACCCTA 479
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 414 TCTGATCTTCAGGGTAGTAACAAAAGGTTAGCAGAACTTGTTGATCAGTGTGAGGCCCTA 473
Query 480 AAGAAGGGAAGGGAAGAATCGGAGGAACGAACAGAGGCCTTGACGCAACTAAAAGATATT 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 AAGAAGGGAAGGGAAGAATCGGAGGAACGAACAGAGGCCTTGACGCAACTCAAAGATATT 533
Query 540 GAAAAGAAACACATAGAGCTGAAGAACGAGATGGTACAATTTGCTGACAACGATCCAGCT 599
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAAAAGAAACACAAAGATCTGAAGAACGAGATGGTACAATTTGCTGACAACGATCCAGCT 593
Query 600 ACTTTGGAGGCAATTAGGAAAGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACA 659
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 ACTTTGGAGGCAAAGAGGAATGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACA 653
Query 660 GATAACATCTTCACATTGAAACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAG 719
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAG 713
Query 720 CTAGAACATCTATACACGGAGGCCGGAATCACTGAGGACTTTGATTACATTGAGTTATCT 779
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 714 CTAGAACATCTATACACGGAGGCGGGAATCACTGAGGACTTTGATTACATAGAGTTATCA 773
Query 780 TCATTCCCGTTGAGCTCATCACACGAGGCTGATACTGCAAGGCAGCTAGGAGAAGATGAA 839
|||||||| ||||||||||| || || |||||||| |||| |||||||| | ||||||||
Sbjct 774 TCATTCCCTTTGAGCTCATCCCATGAAGCTGATACCGCAAAGCAGCTAGTACAAGATGAA 833
Query 840 GCTTAGTTCTAAAACTCTCCAGCATAACAATTAAAGACACTATAGCTTAA 889
|||||||||||| |||||||||||||||| ||||||| || |||||||||
Sbjct 834 GCTTAGTTCTAATACTCTCCAGCATAACAGTTAAAGAAACAATAGCTTAA 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5