BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491843
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29150.1 | Symbols: IQD25 | IQ-domain 25 | chr4:14378767-143... 1860 0.0
> AT4G29150.1 | Symbols: IQD25 | IQ-domain 25 | chr4:14378767-14380511
FORWARD LENGTH=1374
Length=1374
Score = 1860 bits (1007), Expect = 0.0
Identities = 1150/1218 (94%), Gaps = 14/1218 (1%)
Strand=Plus/Plus
Query 1 ATTACGAGAAAGAATCTCACAAAATTGACCAGAGTAAAGAGAGAGAGACAAAAATGGGTC 60
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATTATGAGAAAGAATCTCACAAAATTGACCAGAGT-AA-AGAGAGAGACAAAAATGGGTC 58
Query 61 GAGCTACGAGGTGGTTCAAGGGTTTGTTCGGAATCAAACCTTCTTCATGTTCCGGCGGCA 120
|||| |||||||||||||||||||||||||||||||||||||| || |||| | |||||
Sbjct 59 GAGCAACGAGGTGGTTCAAGGGTTTGTTCGGAATCAAACCTTCCTCTTGTT-C--CGGCA 115
Query 121 CCGACTCCGGCGCAATTTCCAACCGCCTTGACCGCTCTTTATGCGACAGCTACGAGACGA 180
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 116 CCGACTCCGGCACTATTTCTAACCGCCTTGACCGCTCTTTATGCGACAGCTACGAGACTA 175
Query 181 TACCACCTAATATCTCCGAGAAAGAGGCTGCGTGGTTAAGGTCGTTTTACGCGGCTGGAG 240
|||||||||| |||||||||||||| ||||||||| ||||||| || ||||| || ||||
Sbjct 176 TACCACCTAACATCTCCGAGAAAGAAGCTGCGTGGCTAAGGTCCTTCTACGCAGCGGGAG 235
Query 241 AGGAGGAGAAAGAGCGTAGAACGCATGCAATTGCTGTTGCCGCAGCAACAGCTGCTGCAG 300
||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||
Sbjct 236 AGGAGGAAAAAGAGCGTAGAACGCATGCAATTGCGGTTGCTGCCGCGACAGCTGCTGCAG 295
Query 301 CTGACGCAGCGGTTGCGGCGGCTAAAGCGGCTGCTGCGGTTGTTAGGCTCCAAGGTCAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGACGCAGCGGTTGCGGCGGCTAAAGCGGCTGCTGCGGTTGTTAGGCTCCAAGGTCAAG 355
Query 361 GAAAGAGTGGTCCGTTAGGAGGTGG-AAAATGCCGTGAGAATCGTGCCGCTATGCAGATC 419
| ||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||
Sbjct 356 GCAAGAGTGGTCCGTTAGGAGGTGGCAAAA-GCCGTGAGCATCGTGCTGCTATGCAGATC 414
Query 420 CAGTGTACCTTTAGAGGCTACTTGGCGAGAAAAGCGTTAAGAGCGTTGAGAGGAGTGGTG 479
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 CAATGTGCCTTTAGAGGCTACTTGGCGAGAAAAGCGTTGAGAGCGTTGAGAGGAGTGGTG 474
Query 480 AAGATTCAAGCTTTAGTGAGAGGATTTTTGGTACGGAAACAAGCGGCGGCGACCCTCCGG 539
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 475 AAGATTCAAGCTTTAGTGAGAGGTTTTTTGGTACGGAATCAAGCGGCGGCGACTCTCCGG 534
Query 540 AGTATGGAAGCACTTGTTAGAGCTCA-AACTACTGTTAAGTTTCAGAGAGCTCTCCGCCG 598
|||||||||||||||||||||||||| || ||||||||| |||| ||||||||||| ||
Sbjct 535 AGTATGGAAGCACTTGTTAGAGCTCAGAA-AACTGTTAAGATTCAAAGAGCTCTCCGTCG 593
Query 599 TATCGGAAATGCTGCTCCGGCGAGAAAATCCACGGAAAGATTCTCCGGATCTTTGGAAAA 658
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 TAACGGAAATGCTGCTCCGGCGAGAAAATCCACGGAAAGATTCTCCGGATCTTTGGAGAA 653
Query 659 TCGAAACAACGGCGAAGAGACAGCTAAGATAGTGGAGGTAGATACAGGGACCCGACCCGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TCGAAACAACGGCGAAGAGACAGCTAAGATAGTGGAGGTAGATACAGGGACCCGACCCGG 713
Query 719 GACTTATAGGATCCGAGCACCCGTTTTAACCGGGTCGGATTTCTTAGACAACCCGTTTCG 778
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 GACTTACAGAATCCGAGCACCCGTTTTATCCGGGTCGGATTTCTTAGACAACCCGTTTCG 773
Query 779 ACGTACGCTCTCTTCACCGCTCTCGGGTCGAGTCCCACCGCGTCTATCAATGCCTAAACC 838
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ACGTACGCTTTCTTCACCGCTCTCGGGTCGAGTCCCACCGCGTCTATCAATGCCTAAACC 833
Query 839 TGAATGGGAAGAGTGCAGTAGCAAGTTCCCGACGGCGCAGAGCACACCTCGTTTCTCCGG 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 834 TGAATGGGAAGAGTGCAGTAGCAAGTTCCCGACGGCGCAGAGCACACCTCGTTTTTCTGG 893
Query 899 TGGGTCTCCGGCGAGGAGTGTATGCTGCTCTGGTGGCGGAGTAGAGGCGGAGGTTGATAC 958
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 894 TGGGTCTCCGGCGAGGAGCGTGTGCTGCTCTGGTGGCGGAGTAGAGGCGGAGGTGGATAC 953
Query 959 GGAAGCTGATGCTCACCGGTTCTGTTTCTTGTCGGGGGAATTTAACTCGGGTTACATGGC 1018
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGAGGCTGATGCTAACCGGTTCTGTTTCTTGTCGGGGGAATTTAACTCGGGTTACATGGC 1013
Query 1019 GGATACAACGTCATTTAGGGCGAAACTGAGGTCGCATAGCGCACCGAGACAGAGACCGGA 1078
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1014 GGATACAACGTCGTTTAGGGCGAAACTGAGGTCGCATAGTGCACCGAGACAGAGACCAGA 1073
Query 1079 GAGTAATGTTTCCGGC-GGCGGATGGAGAAGGAGTATCGGCGGCGGTGGTGGTCTTAGGA 1137
|||||||| ||| | | ||||||||||| |||||||||||||||||||||| | | ||||
Sbjct 1074 GAGTAATGCTTCAG-CTGGCGGATGGAGGAGGAGTATCGGCGGCGGTGGTG-T-T-AGGA 1129
Query 1138 TGCAGAGACAGTCGTGTTCGGGTGTCAGAGAAGCTGTGGTCGGGAATATCGAGAGGCGTA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TGCAGAGACAGTCGTGTTCGGGTGTCAGAGAAGCTGTGGTCGGGAATATCGAGAGGCGTA 1189
Query 1198 GGATGCATTGGTGATTCT 1215
|||||| |||||||||||
Sbjct 1190 GGATGCGTTGGTGATTCT 1207
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1216 GTTAATTAGGGGAGTAATGTTATTAATTTTATATAGTTTGATATTCTTATAGTTTTCTAA 1275
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1239 GTTAATTAGGGGAGTAATGTTATTAATTTAATATAGTTTGATATTATTATAGTTTTCTAA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5