BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491846
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29120.1 | Symbols: | 6-phosphogluconate dehydrogenase fami... 1690 0.0
> AT4G29120.1 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr4:14350858-14352059 FORWARD LENGTH=1202
Length=1202
Score = 1690 bits (915), Expect = 0.0
Identities = 986/1021 (97%), Gaps = 1/1021 (0%)
Strand=Plus/Plus
Query 1 CAATGCCACTActcctccgtcgatttctctctccctccgtcgtctcctccttcttcctcc 60
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 CAATGCCACTTCTCCTCCGTCGATTTCCCTCTCCCTCCGTCGTCTCCTCCTTCTTCCTCC 61
Query 61 gtcgctcAATGGCTTCCTCATCAATCTCCTCTGATCCCATCACTCCATCAAACACCAAAA 120
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 62 GTCGCTCAATGGCTTCCTCAACAATCTCCTCGGATATAATCACTCCATCAAACACCAAAA 121
Query 121 TCGGATGGATCGGAACCGGAGTCATGGGCCGATCAATGTGTGGACACTTAATCAAAGCCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCGGATGGATCGGAACCGGAGTCATGGGCCGATCAATGTGTGGACACTTAATCAAAGCCG 181
Query 181 GTTACACCGTGACCGTCTTCAATCGAACCATCTCCAAAGCTCAAACTCTCATCGACATGG 240
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTTACACAGTCACCGTCTTCAATCGAACCATCTCCAAAGCTCAAACTCTCATCGACATGG 241
Query 241 GTGCTAACCTCGCTGACTCACCAAACTCAGTCGCTGCTCAATCCGACGTCGTTTTCACCA 300
|||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 GTGCTAACGTCGCCGACTCACCAAACTCAGTCGCTGAACAATCCGACGTCGTTTTCACCA 301
Query 301 TCGTTGGTTATCCTTCCGATGTCCGTCACGTCCTTCTCGATCCAAAGTCCGGAGCTTTAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCGTTGGTTATCCTTCCGATGTCCGTCACGTCCTTCTCGATCCAAAGTCCGGAGCTTTAT 361
Query 361 CTGGTCTCCGTCAAGGAGGTGTTCTCGTTGATATGACTACTTCAGAGCCTTCTTTAGCTG 420
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 362 CTGGTCTCCGTCAAGGAGGTGTTCTCGTTGATATGACTACTTCTGAGCCTTCTTTAGCAG 421
Query 421 AGGAGATAGCTAAAGCTGCTTCCTTTAAGAATTGTTTCTCAATAGATGCTCCGGTCTCAG 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 422 AGGAGATAGCTAAAGCTGCTTCCTTTAAGAATTGTTTCTCAATAGACGCTCCTGTCTCAG 481
Query 481 GTGGAGATTTAGGAGCTAAGAATGGCAAGTTATCTATATTCGCCGGAGGAGATGAAACCA 540
||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 482 GTGGAGATTTAGGAGCTAAGAATGGGAAGCTATCTATATTCGCCGGAGGTGATGAAACCA 541
Query 541 CCGTGAAACGTTTAGATCCGTTGTTTTCGTTAATGGGTAAAGTCAACTTCATGGGAACAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CCGTGAAACGTTTAGATCCGTTGTTTTCGTTAATGGGTAAAGTCAACTTCATGGGAACAA 601
Query 601 GTGGGAAAGGTCAATTTGCGAAGTTGGCTAATCAGATTACAATTGCTTCGACTATGTTAG 660
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 602 GTGGGAAAGGTCAATTTGCGAAATTGGCTAATCAGATAACTATTGCTTCGACTATGTTAG 661
Query 661 GACTTGTGGAAGGTTTGATTTATGCTCATAAAGCTGGACTTGATGTTAAGAAGTTTCTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GACTTGTGGAAGGTTTGATTTATGCTCATAAAGCTGGACTTGATGTTAAGAAGTTTCTTG 721
Query 721 AAGCGATTTCTACTGGAGCTGCTGGTTCTAAGTCTATAGATTTGTATGGAGATAGGATTC 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AAGCGATTTCTACTGGTGCTGCTGGTTCTAAGTCTATAGATTTGTATGGAGATAGGATTC 781
Query 781 TGAAGAGGGATTTTGATCCAGGGTTTTATGTGAATCATTTTGTGAAAGATTTAGGGATTT 840
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 782 TGAAGAGGGATTTTGATCCTGGTTTTTATGTGAATCATTTTGTGAAAGATTTAGGGATTT 841
Query 841 GTTTGAATGAATGTCAGAGGATGGGATTGGCTTTGCCTGGTTTAGCTCTTGCTCAACAGC 900
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 842 GTTTGAATGAATGTCAGAGGATGGGTTTGGCTTTGCCTGGTTTAGCTCTTGCTCAACAGC 901
Query 901 TTTACTTGTCTCTTAAGGCACATGGTGAAGGTGGTCTTGGTACTCAAGCTCTTATCTTGG 960
||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 902 TTTACTTGTCTCTTAAGGCTCATGGTGAAGGTGATCTTGGTACTCAAGCTCTTCTCTTGG 961
Query 961 CTCTTGAGCGTCTCAACAATGTATCTGTTCAACCATCTGTCTCTTGATTTAGGTTCTTGT 1020
||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||| ||
Sbjct 962 CTCTTGAACGTCTCAACAATGTCTCTGTTCAATCATCTGACTCTTGATTTAGGTTCT-GT 1020
Query 1021 T 1021
|
Sbjct 1021 T 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5