BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491849
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29080.1 | Symbols: PAP2, IAA27 | phytochrome-associated pro... 2008 0.0
> AT4G29080.1 | Symbols: PAP2, IAA27 | phytochrome-associated protein
2 | chr4:14323361-14325328 REVERSE LENGTH=1337
Length=1337
Score = 2008 bits (1087), Expect = 0.0
Identities = 1173/1213 (97%), Gaps = 12/1213 (1%)
Strand=Plus/Plus
Query 33 TTTTGTAATCACTAAATGCTTCAAAAGTTTGTCCACAATTATATTTTG--AAAAATGTCT 90
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 63 TTTTGTAATCACTAAATGCTTCAAAAGTTTGTCCACAATTATA-TTTGAAAAAAATGTCT 121
Query 91 GAATCTGTAGCAGCAGAGCATAATTACATAGGTTTGTCAGAGTTTCCAACCATGGAAGAA 150
| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 122 GTATCTGTAGCAGCAGAGCATGATTACATAGGTTTGTCAGAGTTTCCAACCAT-G--GAA 178
Query 151 GCAACAACAATGTCTGACAAAACCAAAACCAGAGACAATAACAACGGTCTCAATTTCAAG 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCAACAACAATGTCTGACAAAACCAAAACCAGAGACAATAACAACGGTCTCAATTTCAAG 238
Query 211 GCTACCGAGTTGAGGCTCGGTTTACCTGGTTCTGAGTCACCGGACCGAGTCGACTCAAGA 270
||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 239 GCTACCGAGTTAAGACTCGGTTTACCCGGTTCTGAGTCGCCGGAGCGAGTCGACTCAAGA 298
Query 271 TTCTTGGCTCTCAACAAGAGTAGCTGTCCCGTGTCAGGTGCCAAAAGGGTGTTCTCCGAC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCTTGGCTCTCAACAAGAGTAGCTGTCCCGTGTCAGGTGCCAAAAGGGTGTTCTCCGAC 358
Query 331 GCCATTAACGAGTCTAACAAATGGATCTTCTCTACC-GGATCCACTACTGCTACTGGTGA 389
|| |||||||| |||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 359 GCTATTAACGACTCTAACAAATGGGTCTTCTCT-CCTGGATCCACTACTGCTACTGGTGA 417
Query 390 TGTCGGGTCGGGTTCTGGTCCCGGTAGCTCCGTCGTAAAAGATGGAAAGTCGACAACTTT 449
|||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 418 TGTCGGCTCGGGTTCTGGTCCCCGTACCTCCGTCGTTAAAGATGGAAAGTCGACAACTTT 477
Query 450 CCCTAAACCGGCTGTTCCGGTTAAGGAGAAGAAGAGCTCTGCAACAGCTCCAGCTTCAAA 509
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 CACTAAACCGGCTGTTCCGGTTAAGGAGAAGAAGAGCTCTGCTACAGCTCCAGCTTCAAA 537
Query 510 AGCACAAGTGGTGGGTTGGCCACCAATAAGATCATTCAGGAAGAACTCAATGGCTTCTTC 569
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCACAAGTGGTGGGATGGCCACCAATAAGATCATTCAGGAAGAACTCAATGGCTTCTTC 597
Query 570 TCAATCTCAGAAACCAGGTAATAACTCAGAGACTGAAGAAGCAGAAGCCAAGTCTGGACC 629
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 TCAATCTCAGAAACCTGGTAATAACTCAGAGACTGAAGAAGCAGAAGCTAAGTCTGGACC 657
Query 630 AGAACAACCTTGCTTGTATGTCAAAGTTAGTATGGAAGGTGCTCCTTACTTGAGGAAAAT 689
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 AGAACAACCTTGCTTGTATGTCAAAGTGAGTATGGAAGGTGCTCCTTACTTGAGGAAAAT 717
Query 690 CGATCTCAAGACTTACAAAAGCTACCTTGAGCTCTCTTCTGCTCTTGAGAAGATGTTCAG 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CGATCTCAAGACTTACAAAAGCTACCTTGAGCTCTCTTCTGCTCTTGAGAAGATGTTCAG 777
Query 750 TTGCTTCACCATTGGTCAGTTTGGGTCTCATGGAGGGTGTGGGAGAGATGGGTTAAACGA 809
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 778 TTGCTTCACCATTGGTCAGTTTGGTTCTCATGGAGGGTGTGGCAGAGATGGGTTAAACGA 837
Query 810 GAGTCGCTTGACTGATCTCTTGCGTGGTTCTGAGTATGTTGTTACCTATGAAGATAAAGA 869
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 GAGTCGCTTGACTGATCTCTTGCGTGGTTCTGAGTATGTTGTAACCTATGAAGATAAAGA 897
Query 870 CAGTGACTGGATGCTCGTCGGAGATGTCCCTTGGGAAATGTTTATATGCTCCTGCAAGAA 929
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAGTGACTGGATGCTGGTCGGAGATGTCCCTTGGGAAATGTTTATATGCTCCTGCAAGAA 957
Query 930 GCTGAGAATCATGAAGAGCTCTGAGGCTATCGGCTTAGCTCCAAGGGTGATGGAAAAGTG 989
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 GCTGAGAATCATGAAGAGCTCTGAGGCTATCGGCTTAGCTCCAAGGGTGATGGAGAAGTG 1017
Query 990 CAGAAGCAGGAACTAGGAAAAGCCCTTTTATGTGATAATATATGATTTGGGAAAAATATG 1049
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 CAGAAGCAGGAACTAGGAAAAGCCCTTTTATGTGATAATATATGATTTGA-AAAAATATG 1076
Query 1050 TTTT-AAGAAAT-GTAATAGCCATTTTGTTTTGAAGTATTCTTGTGTGTTTGTGTGCTAG 1107
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTTTTAAGAAATTG-AATAGCCATTTTGTTTTGAAGTATTCTTGTGTGTTTGTGTGCTAG 1135
Query 1108 GAGTGATGTTTGATCTTTCTTAAAACAGCCTCTACTAAGCTCTAATAAGGCCTCTTCCTC 1167
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1136 GAGTGATGTTTGATCTTTCTTAAACCAGCCTCTACTAAGCTCTAATAAGGCCTCTTCCTC 1195
Query 1168 TTACTTCTGTCTCTAATCAATCTAATGAAACATATGGGTTTGTGTATGTGTGTTTGCCAA 1227
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTACTTCTTTCTCTAATCAATCTAATGAAACATATGGGTTTGTGTATGTGTGTTTGCCAA 1255
Query 1228 GGAAGACTTCATA 1240
|||||||||||||
Sbjct 1256 GGAAGACTTCATA 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5