BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491851
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29070.1 | Symbols: | Phospholipase A2 family protein | chr... 1628 0.0
> AT4G29070.1 | Symbols: | Phospholipase A2 family protein | chr4:14321813-14323307
FORWARD LENGTH=1121
Length=1121
Score = 1628 bits (881), Expect = 0.0
Identities = 1033/1106 (93%), Gaps = 11/1106 (1%)
Strand=Plus/Plus
Query 2 aaaaaaaCGAAAACGTGTGTCTGTCTCTTCTCGCAGCGTCTCTCACAGCTCAGATGAATT 61
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 18 AAAAAAACGAAAACGTGTGTCTGTCTCTTCTCGTAGCGTCTCTCA-AGCTCAGATGAATT 76
Query 62 TTGGGTTACCAAGTTTTTCTTGGTTTGGCAGCATCAGCTCAAAGAAAGATGTAGCTATGA 121
||||||| |||||| | ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 77 TTGGGTTGCCAAGTATATCTTGGTTTGGTAGCATCAGCACAAAGAAAGATGTAGCTATGA 136
Query 122 TTGAAACCGTGACATCGACGACAACTTCTCTCTTAGAACAGCCAGAACAAGGGAAAGGAA 181
|||| |||||||| | || ||||||||||| || ||||||||||| |||| ||||| ||
Sbjct 137 TTGATTCCGTGACACCAACAACAACTTCTCTATTGGAACAGCCAGAGCAAGAGAAAGCAA 196
Query 182 CAACCTTTCTTCTGAAACAGTCAGAGAAAGAGAAAGGCTTATTTGATATAAAGATATGGA 241
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 197 CAACCTTTCTTCTCAAACAGCCAGAGAAAGAGAAAGGCTTATTTGATATAAAGATATGGA 256
Query 242 CTTGGTCCT--TT-ACTTCAGTTCTTCCTTGGGCTACAAATGCCGCTGATGGAAAGCAGA 298
||||||||| || | |||||||||||||||| || |||||||| ||||||| |||||||
Sbjct 257 CTTGGTCCTCCTTCAGTTCAGTTCTTCCTTGGTCTGCAAATGCCTCTGATGGTAAGCAGA 316
Query 299 AACCCACTACTATTAATAGAGGGTTAAAAAGGCATGCCCTTTCTCGGAGAG-CTTCAAGA 357
||||||||||||| || |||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 317 AACCCACTACTATCAACAGAGGGTTAAAAAGGCATGCTCTTTCTCGGAG-GTCATCAAGA 375
Query 358 TCAAATGGTGTGAATACTGTTTATCGGTTTAGACCTTATGTGTCCAAGGTTCCATGGCAC 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 376 TCAAATGGTGTGAATACTGTTTATCGGTTTAGACCTTATGTGTCTAAGGTTCCGTGGCAT 435
Query 418 ACAGGAACGAGGGCGTTTCTTTCGCAGCTTTTCCCGAGATATGGACATTATTGTGGACCT 477
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 436 ACAGGGACGAGGGCGTTTCTGTCACAGCTTTTCCCGAGATATGGACATTATTGTGGACCT 495
Query 478 AACTGGTCTAGTGGGAAAGATGGAGGTTCGATGGTATGGGATCAGAGACCTATTGATTGG 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 496 AACTGGTCTAGTGGGAAAGATGGAGGTTCGATGGTTTGGGATCAGAGACCTATTGATTGG 555
Query 538 TTAGATCATTGCTGTTATTGCCATGATATTGGTTATGATACTCATGACCAGGCAGAGTTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTAGATCATTGCTGTTATTGCCATGATATTGGTTATGATACTCATGACCAGGCAGAGTTG 615
Query 598 CTTAAAGCTGACATGGCGTTTCTCGAGTGTTTGGAATCAAATAAGCGTGTAGTTACTAGG 657
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 616 CTTAAAGCTGACATGGCGTTTCTTGAGTGTTTGGAATCAAACAAGCGTGTAGTTACTAGG 675
Query 658 GGAGATGCTCAAGTTGCTCACTTTTACAAAACAATGTGCATTACAGGTCTCAAGAGCATA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GGAGATGCTCAAGTTGCTCACTTTTACAAAACAATGTGCATTACAGGTCTCAAGAGCATA 735
Query 718 CTAATACCCTACAGAAGCTACCTTGTGAAGATACAATACGGGCAAAATCTGCTTGACTTT 777
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 736 CTAATACCCTACAGAAGTTACCTTGTGAAGATACAATACGGGCAAAATCTACTCGACTTT 795
Query 778 GGCTGGATAGTGAGCAACCTCAGCAAGAGAAGCTGGAGTTTTCAGAAAAATTGAGACATA 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 796 GGCTGGATAGTGAGCAACCTCAGCAAGAGAAGCTGGAGTTTTCAGAAAAACTGAGACATA 855
Query 838 ACGAAGCAAATCGGAGTTACTCTGCCATCCTGGTAAGCCTTTGTGGGTGTCTTCACTTTC 897
| |||| | ||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 856 AGGAAGTATATCGGAGGTACTCTGTCATCCCGGTAAGCCTTTGTGGGTGTCTTCACTTTC 915
Query 898 GTTTTGTACATAGAAGTCGTAAAGAGGAGGAATCTGAGGATTAGGTTCT--A-TAGTATA 954
|||||||||||||||||| |||||| |||||||||||||||||||||| | |||||||
Sbjct 916 GTTTTGTACATAGAAGTCATAAAGAA-AGGAATCTGAGGATTAGGTTCTTTAGTAGTATA 974
Query 955 GATAAATATGTTTAGTATGAAAATGTGGAAACGTTAGTAAGTGGTATGCGTCTTTTAAAC 1014
|||| |||||||||||||||| ||||| ||||| ||||||||| | |||||||| |||||
Sbjct 975 GATATATATGTTTAGTATGAAGATGTGAAAACGCTAGTAAGTGTTGTGCGTCTTGTAAAC 1034
Query 1015 CTGTTGTACATGTTTAGTAATAAACCCTTGTCTTTGAAATCTTTTTGGTTGAATGCTATA 1074
| ||||||||||| ||||||||||||||||| |||||| |||||| | ||||||| ||||
Sbjct 1035 CCGTTGTACATGTCTAGTAATAAACCCTTGTTTTTGAAGTCTTTT-GTTTGAATGATATA 1093
Query 1075 AGCTCTATCAAAGGATCAATATAACT 1100
|||||||||||||||||| |||||||
Sbjct 1094 AGCTCTATCAAAGGATCATTATAACT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5