BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491854
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29040.1 | Symbols: RPT2a | regulatory particle AAA-ATPase 2... 2606 0.0
AT2G20140.1 | Symbols: | AAA-type ATPase family protein | chr2... 1738 0.0
> AT4G29040.1 | Symbols: RPT2a | regulatory particle AAA-ATPase
2A | chr4:14312303-14314600 FORWARD LENGTH=1612
Length=1612
Score = 2606 bits (1411), Expect = 0.0
Identities = 1540/1602 (96%), Gaps = 9/1602 (1%)
Strand=Plus/Plus
Query 1 TACaagagagaaacaaagtaacctgaagaactcaagagaaatcgagag-agaagagaaTC 59
||||||||||||| |||| ||||| |||||| |||||||| ||||| || ||||||
Sbjct 8 TACAAGAGAGAAAGAAAGGAACCT--CGAACTC-AGAGAAATTGAGAGAAG-AGAGAAGA 63
Query 60 ATCATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGATCGGAAGCCTGATGGT 119
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 64 ATCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGGAGATCGGAAACCTGATGGT 123
Query 120 GGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 179
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 124 GGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 183
Query 180 CAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 243
Query 240 AAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTATTTGTTGATGGAGGAA 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 AAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGGATTATTTGTTGATGGAGGAA 303
Query 300 GAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAAGAAGATAGA 359
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 304 GAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAGGAAGATAGA 363
Query 360 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 423
Query 420 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGAGTACTATGTTGGGATTTTG 479
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 424 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGACCTGAGTACTACGTTGGGATTTTG 483
Query 480 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 543
Query 540 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 603
Query 600 GAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 663
Query 660 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 723
Query 720 AAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 779
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 783
Query 780 AAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 839
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 843
Query 840 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGCTTTTCAGAGTTGCCGATGAC 899
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 844 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGAC 903
Query 900 CTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTATTGGTACCAAGCGGTATGAC 959
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 904 CTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGGTATGAC 963
Query 960 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1023
Query 1020 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGACT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1024 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGAGT 1083
Query 1080 CTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1139
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CTTGACCCAGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1143
Query 1140 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1203
Query 1200 GATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGTTCTCAGGAGCAGATATCAAG 1259
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1204 GATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAG 1263
Query 1260 GCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGCGTCGTATGAAGGTGACGCAT 1319
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1264 GCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGGAGCGTCGTATGAAGGTGACACAT 1323
Query 1320 CCTGATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGTGTCCCTGAA 1379
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1324 CCTGATTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGCGTCCCTGAA 1383
Query 1380 GGCCTTTACATGTAAAATCATAATCATATCGTCATCATCGGCTTTCCTCCTCTACACTTT 1439
||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1384 GGCCTCTACATGTAAAATTATAATCATATCGTCATCATCGGCTTTCCTCCTCCACACTTT 1443
Query 1440 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1503
Query 1500 TGATCTCCTTCAGTAAAACGATTCCTCATTTCCATTTAGGATACCTATTTCTG-ATTAGC 1558
||||||||| | ||||||| |||||||||||||||||||||| ||||||| | ||||
Sbjct 1504 TGATCTCCTCCGGTAAAACAATTCCTCATTTCCATTTAGGATGTCTATTTC-GCATTAAA 1562
Query 1559 CTTAACCAACTGAAACCAAGACCaaa-aaaaCAACCTGATCT 1599
|||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct 1563 CTTAACCAACTGAAACCAAGCCCAAATAAAAAAAC-TGATCT 1603
> AT2G20140.1 | Symbols: | AAA-type ATPase family protein | chr2:8692700-8695084
FORWARD LENGTH=1615
Length=1615
Score = 1738 bits (941), Expect = 0.0
Identities = 1219/1354 (90%), Gaps = 16/1354 (1%)
Strand=Plus/Plus
Query 47 agagaaga-gaaTCATC-ATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGAT 104
|||| ||| ||| || | |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 21 AGAG-AGACGAAGCA-CAATGGGTCAAGGACCTTCCGGCGGATTGAATCGGCAAGGAGAT 78
Query 105 CGGAAGCCTGATGGTGGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCT 164
||||| || |||||||| || |||||||||||||||||||| || || |||||||| |||
Sbjct 79 CGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCACCACCTGCT 138
Query 165 CGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTT-CCGAC 223
|||||||||||||||||||||||||||||||| || || |||||||||||| || |||||
Sbjct 139 CGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGCGAGA-TTGCCGAC 197
Query 224 GGTGACTCCGTCTACTAAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTA 283
||||||||| |||||||| |||||||| || || |||||||||||||| |||||||| ||
Sbjct 198 GGTGACTCCTTCTACTAAATGTAAGCTTCGATTGCTGAAATTGGAGCGAATCAAGGACTA 257
Query 284 TTTG-TTGATGGAGGAAGAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGA 342
|||| || |||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct 258 TTTGCTT-ATGGAGGAAGAGTTCGTAGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGA 316
Query 343 AAGCTGAAGAAGATAGATCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGA 402
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 317 AAGCTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCA 376
Query 403 AT-TTGGAAGAG-TTGATTGATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGA 460
|| || |||||| || ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 377 ATCTT-GAAGAGCTT-ATTGATGAGAATCACGCCATTGTTTCTTCTTCGGTTGGTCCTGA 434
Query 461 GTACTATGTTGGGATTTTGTCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGAT 520
|||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || || ||
Sbjct 435 GTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTAT 494
Query 521 TTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAAT 580
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 495 TTTGATGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAAT 554
Query 581 GGTGTCTGTGATGAAAGTTGAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTT 640
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 555 GGTGTCTGTGATGAAAGTGGAGAAGGCTCCTTTGGAGTCATATGCTGACATTGGAGGTTT 614
Query 641 AGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAGCTT-CCTTTGACTCATCCTGAGT 699
||||||||||||||||||||||||||||||||||||| || ||||| || ||||| |||
Sbjct 615 AGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAG-TTACCTTTAACACATCCCGAGC 673
Query 700 TGTATGAAGATATTGGTATTAAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAA 759
|||||||||||||||| ||||||||||| || |||||||| |||||||||||||| || |
Sbjct 674 TGTATGAAGATATTGGAATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCA 733
Query 760 CTGGGAAGACATTGCTTGCTAAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAG 819
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | |
Sbjct 734 CTGGGAAGACATTGCTTGCTAAGGCAGTGGCAAATTCTACTTCAGCTACTTTCTTGCGTG 793
Query 820 TTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGC 879
|||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 794 TTGTCGGTAGTGAACTGATTCAGAAGTATTTAGGAGATGGTCCCAAGCTTGTGAGGGAAC 853
Query 880 TTTTCAGAGTTGCCGATGACCTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTA 939
||||||| ||||| ||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 854 TTTTCAGGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTG 913
Query 940 TTGGTACCAAGCGGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGT 999
|||| ||||||||||||||||| ||||||| || |||||||| ||||||||||| ||||
Sbjct 914 TTGGCACCAAGCGGTATGACGCAAACTCAGGTGGGGAACGTGAAATCCAAAGAACCATGT 973
Query 1000 TGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTG 1059
||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 974 TGGAACTACTGAACCAGCTTGATGGGTTTGATTCAAGAGGAGATGTTAAGGTTATTCTCG 1033
Query 1060 CAACAAACAGAATCGAGACTCTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGA 1119
| |||||||| ||||||| ||||||||||||||| ||| |||| || ||||| || ||||
Sbjct 1034 CGACAAACAGGATCGAGAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGA 1093
Query 1120 AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACAT 1179
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AAATCGAATTCCCTCTTCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACAT 1153
Query 1180 CGAAGATGACTCTCTCGGAAGATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGT 1239
| ||||||||| | | |||||||| ||| | ||||||||||| ||||||||||||||||
Sbjct 1154 CAAAGATGACTTTGGCTGAAGATGTGAACTTAGAAGAGTTTGTAATGACAAAAGACGAGT 1213
Query 1240 TCTCAGGAGCAGATATCAAGGCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGC 1299
|||||||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||
Sbjct 1214 TCTCAGGAGCTGATATAAAGGCAATATGCACAGAAGCTGGTCTGCTTGCTCTTAGAGAGC 1273
Query 1300 GTCGTATGAAGGTGACGCATCCTG-ATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAG 1358
|||| ||||| ||||||||| || | |||||||| ||||||||||||||||||||||||
Sbjct 1274 GTCGGATGAAAGTGACGCATG-TGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAG 1332
Query 1359 AAGAAAGAAGGTGTCCCTGAAGGCCTTTACATGT 1392
||||||||||| || |||||||| ||||||||||
Sbjct 1333 AAGAAAGAAGGAGTTCCTGAAGGTCTTTACATGT 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78965457285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5