BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491857
Length=2509
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29010.1 | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase fam... 3803 0.0
> AT4G29010.1 | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family
| chr4:14297044-14302147 REVERSE LENGTH=2565
Length=2565
Score = 3803 bits (2059), Expect = 0.0
Identities = 2396/2549 (94%), Gaps = 62/2549 (2%)
Strand=Plus/Plus
Query 1 TGTAAACTCCTGATTTATCAAAGGGCCCAATTATAACaaaaaaaCCAGATCTTTATCCAA 60
|||||||||||||||||||||||| |||| || || | | ||||||||||||||||||||
Sbjct 11 TGTAAACTCCTGATTTATCAAAGGCCCCATTTTTATC-ACAAAACCAGATCTTTATCCAA 69
Query 61 TTTTGTCACTCACCGAACGCTAAAGTTTTCATTTTTCAATCTCATCACAGAGAAAAACTA 120
||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||| |
Sbjct 70 TTTTGTCACTCACCGAATAATAAAGCTTTCATTTTTCAATCTCAT--CAGAGAGAAA-TT 126
Query 121 ATAGCTATGGCGAAGAAGATTGGAGTGACGATGGATGTTGGGAACGATGGTGTTGCTGTC 180
| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 127 A-AGCTATGGCGAAGAAGATTGGAGTAACGATGGAAGTTGGGAACGATGGTGTTGCTGTC 185
Query 181 ATCACCATTTCTAATCCTCCTGTTAACTCTTTGGCCAGTCCAATTATTTCTGGGTTGAAG 240
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 186 ATCACCATTTCTAACCCTCCTGTTAACTCTTTAGCCAGTCCAATTATTTCTGGGTTGAAG 245
Query 241 GAGAAGTTTCGAGACGCCAATCAAAGGAATGATGTTAAGGCCATCGTATTGACT-GGGAA 299
||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 246 GAGAAGTTTCGTGACGCCAATCAAAGGAATGATGTTAAGGCCATCGTGTTGA-TCGGGAA 304
Query 300 CAATGGAAGATTTTCGGGTGGTTTTGATATCAATGTCTTCCAGCAAGTTCATAAGACTGG 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 305 CAATGGAAGATTTTCGGGTGGTTTTGATATCAATGTCTTTCAGCAAGTTCATAAGACTGG 364
Query 360 GGATTTATCGCTTATGCCTGAAGTATCTGTTGAGCTCGTGTGTAACCTGATGGAAGACTC 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 365 GGATTTATCGCTTATGCCTGAAGTATCTGTTGAGCTTGTGTGTAACCTGATGGAAGACTC 424
Query 420 TAGGAAGCCGCTTGTTGCTGCAGTTGAAGGATTAGCTCTTGGTGGTGGTTTAGAACTGGC 479
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 425 CAGGAAGCCGGTTGTTGCTGCAGTTGAAGGATTAGCTCTTGGTGGTGGTTTGGAACTTGC 484
Query 480 TATGGCGTGTCATGCCCGTGTTGCTGCTCCGAAAGCTCAACTAGGCTTACCAGAATTGAC 539
||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 485 AATGGCGTGTCATGCCAGAGTTGCTGCTCCGAAAGCTCAATTAGGCTTACCAGAACTGAC 544
Query 540 TCTTGGAGTGATTCCAGGTTTTGGAGGAACCCAACGTCTTCCAAGGCTAGTAGGCCTTGC 599
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 545 TCTTGGAGTGATTCCTGGTTTTGGAGGAACCCAACGTCTTCCAAGGTTAGTAGGCCTTGC 604
Query 600 AAAAGCAACGGATATGATACTGCTTTCGAAGTCAATATCGTCAGAAGAGGGGCAGAAACT 659
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 605 AAAAGCAACGGATATGATACTGCTTTCTAAGTCAATATCCTCAGAAGAGGGGCACAAACT 664
Query 660 GGGTCTTATTGATGCCTTGGTGCCACCTGGAGATGTGTTGAGCACGTCCAGAAAGTGGGC 719
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 665 GGGTCTCATTGATGCCTTGGTGCCACCTGGAGATGTGTTGAGCACATCCAGAAAGTGGGC 724
Query 720 TCTAGATATTGCAGATGGACGTAAACCCTTTTTGC-GCTCACTGCACAGGACCGACAAAA 778
|||||| |||||||| ||||||||||||||| ||| | ||||||||||| ||||||||||
Sbjct 725 TCTAGACATTGCAGAGGGACGTAAACCCTTTCTGCAG-TCACTGCACAGAACCGACAAAA 783
Query 779 TTGGTTCTTTATCTGAAGCTCGTGCTATATTAAAGAATTCAAGACAGCTAGCCAAGAAGA 838
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 784 TTGGTTCTTTATCTGAAGCTCGTGCTATATTGAAGAATTCAAGACAGCTAGCCAAGAAGA 843
Query 839 TAGCCCCAAATATGCCTCAGCACCATGCTTGCATTGAGGTGATTGAAGAAGGAATCGTCC 898
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 844 TTGCCCCAAATATGCCTCAGCACCATGCTTGCATTGAGGTGATTGAAGAAGGAATCATCC 903
Query 899 ATGGAGGATATAGTGGGGTTCTTAAGGAAGCAGAAGTTTTCAAGCAACTAGTACTGTCAG 958
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 904 ATGGAGGATACAGTGGGGTTCTCAAGGAAGCAGAAGTTTTCAAGCAACTAGTACTGTCAG 963
Query 959 ACACTGCAAAGGGTCTTGTTCATGTTTTCTTCGCACAACGTGCAACATCAAAAGTGCCTA 1018
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 964 ACACTGCAAAGGGTCTTGTTCATGTTTTCTTTGCACAACGTGCAACATCAAAAGTGCCTA 1023
Query 1019 ATGTAACTGACGTTGGATTGAAACCGAGGCCGATaaaaaaaGTTGCAGTTATTGGTGGAG 1078
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1024 ATGTAACTGACGTTGGATTGAAACCAAGGCCGATAAAAAAAGTTGCAGTTATTGGTGGCG 1083
Query 1079 GTCTGATGGGTTCTGGCATCGCTACGGCTCTACTTCTAAGCAATATAAGAGTTGTGCTTA 1138
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1084 GTCTGATGGGTTCAGGCATCGCTACGGCTCTACTTCTAAGCAATATAAGAGTTGTGCTCA 1143
Query 1139 AAGAAATAAATTCAGAATACCTTATGAAGGGAACAAAATCAGTTGAAGCAAATATCAAAG 1198
|||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1144 AAGAAATAAACTCAGAATTCCTTATGAAGGGAATAAAATCAGTTGAAGCAAATATGAAAA 1203
Query 1199 GCTTGGTATCTAGGGGGAAACTGACACAAGATAAAGCAGGAAAGGCCCTCTCTTTGTTCA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GCTTGGTATCTAGGGGGAAACTGACACAAGATAAAGCAGGAAAGGCCCTCTCTTTGTTCA 1263
Query 1259 AGGGAGTACTCGACTACACAGAATTCAAAGATGTGGACATGGTCATAGAGGCAGTGATTG 1318
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1264 AGGGAGTACTTGATTACACAGAATTCAATGATGTGGACATGGTCATAGAGGCAGTGATTG 1323
Query 1319 AAAACATTCAGTTGAAACAAAACATATTCAAAGAAATCGAAAAGGTTTGTTCACCCCATT 1378
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1324 AAAACATTCAATTGAAACAAAACATATTCAAAGAAATCGAAAAGGTTTGTTCACCCCACT 1383
Query 1379 GCATTTTGGCGAGTAATACATCTACTATCGACCTCGACGTAATTGGGGAAAAGACTAACT 1438
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1384 GCATTTTGGCGAGTAATACATCTACTATCGACCTCGATGTAATTGGTGAAAAGACTAACT 1443
Query 1439 CAAAAGATCGCATTGTTGGCGCACATTTCTTCAGCCCGGCCCATCTGATGACCCTTCTCG 1498
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1444 CAAAAGATCGCATTGTTGGCGCACATTTCTTCAGTCCGGCCCATCTGATGCCCCTTCTCG 1503
Query 1499 AGATTGTTCGTTCAAAGAATACTTCTGCTCAGGTGATTTTGGATCTCATGGCGGTTGGAA 1558
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1504 AGATTGTTCGTTCAAAGAATACTTCTGCTCAGGTGATTCTGGATCTCATGGCGGTTGGAA 1563
Query 1559 AGGCCATAAAGAAAGTTCCCGTGGTGGTTGGAAACTGCATAGGCTTTGCAGTGAATAGGA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AGGCCATAAAGAAAGTTCCCGTGGTGGTTGGAAACTGCATAGGCTTTGCAGTGAATAGGA 1623
Query 1619 CATTCTTTCCGTATACACAAGCTGCACATATGTTGGCCAATCTAGGTGTTGACTTGTTCA 1678
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 CATTCTTTCCTTATTCACAAGCTGCACATATGTTGGCCAATCTAGGTGTTGACTTGTTCA 1683
Query 1679 GAATTGACAGCGTGATTACCTCTTTCGGCTTGCCGTTGGGCCCTTTCCAGCTTGGTGATT 1738
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1684 GAATTGACAGCGTTATTACCTCTTTCGGCTTGCCATTGGGCCCTTTCCAGCTTGGTGATT 1743
Query 1739 TGGCTGGACACGGGATTGGATTAGCAGTTGGGCCGATATATGCCAAGGTCTATGGTGACC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TGGCTGGACACGGGATTGGATTAGCAGTTGGGCCGATATATGCCAAGGTCTATGGTGACC 1803
Query 1799 GCATGTTCAGATCTCCAATGACCGAGCTTCTTCTTAAGAGCGGGCGAAATGGAAAAATCA 1858
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1804 GCATGTTCAGATCTCCAATGACAGAGCTTCTTCTTAAGAGCGGGCGAAATGGAAAAATCA 1863
Query 1859 ACGGGAA-AGGATACTATATATACGAAAAGGGAAGCAAACCAAAACCCGATCCATCAGTG 1917
|||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1864 ACGG-AAGAGGATACTATATATACGAAAAGGGAAGCAAACCAAAACCTGATCCATCAGTG 1922
Query 1918 CTTTCAATTGTTGAGGAATCGAGGAAACTGACCAATATAATGCCTGGTGGGAAGCCTATA 1977
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1923 CTTTCAATTGTTGAGAAATCAAGGAAACTGACCAATATCATGCCTGGTGGGAAGCCTATA 1982
Query 1978 TCAGTATCTGACAAAGAAATTGTAGAGATGATCTTATTCCCTGTGGTTAACGAGGCATGC 2037
|||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1983 TCAGTAACTGATAAAGAAATTGTAGAGATGATCTTATTCCCTGTTGTCAACGAGGCATGC 2042
Query 2038 CGTGTCCTAGATGAAGGAGTTGTGATCCGAGCCTCAGACTTGGACATTGCGTCTGTCCTT 2097
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 CGCGTCCTAGATGAAGGAGTTGTGATCCGAGCCTCAGACTTGGACATTGCGTCTGTCCTT 2102
Query 2098 GGAATGAGTTTTCCTTCTTACCGTGGG-GGAATTGTTTTCTGGGCAGACACAGTTGGACC 2156
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 2103 GGAATGAGTTTTCCTTCTTACCG-GGGAGGAATTGTTTTCTGGGCAGACACTGTTGGACC 2161
Query 2157 AAAGTACATATATGAAAGGCTCAAGAGATTGTCGGAGACTTACGGCAGCTTTTTCAAACC 2216
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2162 AAAGTACATATATGAGAGGCTCAAGAAATTGTCGGAGACTTATGGCAGCTTTTTCAAACC 2221
Query 2217 GTCGAGGTATCTGGAGGAAAGAGCAATGAATGGAATGCTTTTGAGTGAATCGAAATCGTC 2276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 ATCGAGGTATCTGGAGGAAAGAGCAATGAATGGAATGCTTTTGAGTGAATCGAAATCGTC 2281
Query 2277 GAGGTCTCGA-TTGTGAAGCGTTTA-----G-----G-AGA-GG-----CTGAAGGTGTT 2318
|||||| | | |||||||||||||| | | ||| || |||||||||||
Sbjct 2282 GAGGTC-CAAATTGTGAAGCGTTTAATTAAGTATATGCAGAAGGAGAGGCTGAAGGTGTT 2340
Query 2319 AGTCA--AA-TGAGAATAAATCAGTCTCTCTTATTGTTTCAAAGTT-AA--TT-----GC 2367
||||| || ||| |||||||||||||||||| ||||||||||||| || || ||
Sbjct 2341 AGTCACTAAATGAAAATAAATCAGTCTCTCTTGTTGTTTCAAAGTTCAAAGTTAAAATGC 2400
Query 2368 TATTAAGGTGT--TTGTTGTTAACACT-T-AAAAGAAACAAATTTTATGCTCTTAATAAA 2423
||||||||||| |||||||||||||| | |||| |||||| |||| |||||||||||||
Sbjct 2401 TATTAAGGTGTGGTTGTTGTTAACACTCTTAAAATAAACAA-TTTTCTGCTCTTAATAAA 2459
Query 2424 TGTTTGTAGTGATGCCATTGTCATTCTCATATATAAGTTATGATTTGTTCTAGTCAG-GA 2482
|||||||||||| | || || ||| ||| | | ||||||||||||||||| ||| ||
Sbjct 2460 TGTTTGTAGTGACGTCA--GT--TTC--ATA-A-A-GTTATGATTTGTTCTAGCCAGAGA 2510
Query 2483 AGAAAA-TATAGA-GAAATTTACATCTTT 2509
||||| ||| || |||||||||||||||
Sbjct 2511 -GAAAAATAT-GAAGAAATTTACATCTTT 2537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124514352526
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5