BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491860
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28980.2 | Symbols: CDKF;1, CAK1AT | CDK-activating kinase 1... 2287 0.0
> AT4G28980.2 | Symbols: CDKF;1, CAK1AT | CDK-activating kinase
1AT | chr4:14288439-14290700 FORWARD LENGTH=2070
Length=2070
Score = 2287 bits (1238), Expect = 0.0
Identities = 1398/1474 (95%), Gaps = 16/1474 (1%)
Strand=Plus/Plus
Query 1 TTTT-AAGGAGATGGATAAACAACCGGCGAGCAGCTGGAGTATCCATACCCGGCCGGAGA 59
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 22 TTTTAAAGGAGATGGATAAACAACCGGCGACCAGTTGGAGTATCCATACCCGGCCGGAGA 81
Query 60 TAATCGCCAAGTACGAGATCTTCGAGCGAGTCGGATCCGGTGCTTACGCCGATGTTTACA 119
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 82 TAATCGCCAAGTACGAGATCTTCGAGCGAGTCGGATCCGGAGCTTACGCCGACGTTTACA 141
Query 120 GAGCTCGCCGTCTCTCCGACGGACTCATCGTCGCGCTCAAGGAGATTTTCGATTACCAGT 179
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 142 GAGCTCGCCGTCTCTCCGACGGTCTAATCGTCGCGCTCAAGGAGATTTTCGATTACCAAT 201
Query 180 CTGCGTTTCGAGAAATTGACGCGCTCACCATCCTCAATGGA-CATCCTAATGTCGTCGTT 238
||||||| || || ||||||||||||||||||||||||||| | ||||||||| || |||
Sbjct 202 CTGCGTTCCGGGAGATTGACGCGCTCACCATCCTCAATGGATC-TCCTAATGTAGTTGTT 260
Query 239 ATGCACGAATACTTCTGGCGTGAGGACGAGAACGCTGTGCTTGTGCTTGAGTTTCTTAGG 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 ATGCACGAATACTTCTGGCGTGAGGAAGAGAACGCTGTGCTTGTGCTTGAGTTTCTTAGG 320
Query 299 TCAGATCTCGCTGCGGTGATCCGTGATGCTAATAGGAAGAAGAAGATAGAAGGAGGAGAT 358
|| |||||||||||||||||||| |||| ||| |||||||||||| |||||||||| |||
Sbjct 321 TCGGATCTCGCTGCGGTGATCCGAGATGGTAAGAGGAAGAAGAAGGTAGAAGGAGGGGAT 380
Query 359 GGATTCTCTGTTGGGGAGATTAAGAGATGGATGATTCATATTTTAACTGGAGTTGATGCT 418
|||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 381 GGATTCTCGGTTGGGGAGATTAAGAGATGGATGATTCAGATTTTAACCGGTGTTGATGCT 440
Query 419 TGCCATAGGAATTTGATTGTACATAGAGATTTGAAGCCTGGGAATATGTTGATTTCTGAT 478
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TGTCATCGGAATTTGATTGTACATAGAGATTTGAAGCCTGGGAATATGTTGATTTCTGAT 500
Query 479 GATGGAGTGCTTAAGCTTGCTGATTTTGGTCAGGCTAGGATACTCATGGAGCCTGATATT 538
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 501 GATGGAGTTCTTAAGCTTGCTGATTTTGGTCAGGCTAGGATACTCATGGAGCATGATATT 560
Query 539 GTAGCTTCAGATGAAAACCAACAGGTTTATAAACTGGAAGA-AAATGATGGAGAAACCAG 597
||||||||||||||||||||||| | ||| ||||||||||| ||| ||||||||||||||
Sbjct 561 GTAGCTTCAGATGAAAACCAACAAGCTTACAAACTGGAAGACAAA-GATGGAGAAACCAG 619
Query 598 CACAGAACCACCGGAAGTTATTCCTGATTATGAGAACTCACCTCGGCAAGGGTCTGATGG 657
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 620 --C-GAACCACCAGAAGTTATTCCTGATTATGAGAACTCACCTAGGCAAGGGTCTGATGG 676
Query 658 TCAGGAACGGGTAGCGATGAGTAAAGACGAATACTTCCGACAGGTGGAAGAGCTCAAGGC 717
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 677 TCAGGAACGGGAAGCGATGAGTAAAGACGAGTACTTCCGACAGGTGGAAGAGCTCAAGGC 736
Query 718 TAAACAGGTTGTTAGAGATGATACTGATAAGGACTCGAACGTGCATGATGGAGATATATC 777
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 737 TAAACAGGTTGTTAGAGATGATACTGATAAGGACTCGAATGTGCATGATGGAGACATATC 796
Query 778 TTGTCTTGCAACGTGCACTGTTAGTGAAATGGATGATGATCTTGGTAGGAACTCTTTTTC 837
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 797 TTGCCTTGCAACGTGCACTGTTAGTGAAATGGATGATGATCTCGGTAGGAACTCGTTTTC 856
Query 838 TTACGATGCTGATGAAGCAGTGGATGATACACAAGGTTTGATGACATCTTGTGTGGGTAC 897
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 857 TTACGATGCTGACGAAGCAGTGGATGATACACAGGGTTTGATGACATCTTGTGTGGGAAC 916
Query 898 CAGATGGTTTAGGCCACCAGAACTGCTCTATGGATCTACAATGTATGGGTTAGAGGTTGA 957
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 917 CCGATGGTTTAGGCCACCAGAACTGCTCTATGGATCTACGATGTATGGGTTAGAGGTCGA 976
Query 958 TCTGTGGTCGCTTGGTTGTGTGTTTGCAGAACTCTTGTCTCTTGAGCCTTTGTTCCCAGG 1017
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TCTATGGTCGCTTGGTTGTGTGTTTGCAGAACTCTTGTCTCTTGAGCCTTTGTTCCCAGG 1036
Query 1018 AATTTCAGATATTGATCAGATCAGCAGAGTGACCAATGTGCTGGGAAATTTAAATGAAGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AATTTCAGATATTGATCAGATCAGCAGAGTGACCAATGTGCTGGGAAATTTAAATGAAGA 1096
Query 1078 GGTCTGGCCTTGTTGTGTCGATCTTCCAGACTACAAATCTATCTCATTTGCTAAAGTAGA 1137
|||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1097 GGTCTGGCCTGGTTGTGTTGATCTTCCAGACTACAAGTCAATCTCATTTGCTAAAGTAGA 1156
Query 1138 ATCTCCTCTTGGTATAGAAGGTTGTCTTCCCAACCATTCAGGGGATGTGATATCGCTGCT 1197
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1157 ATCTCCTCTTGGTATTGAAGGATGCCTTCCCAACCATTCAGGGGATGTGATATCGCTGCT 1216
Query 1198 CAAGAAGCTTATCTGTTATGATCCAGCTAGTAGAGCTACTGCTATGGAGATGCTGAATGA 1257
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1217 CAAGAAGCTTATCTGTTATGATCCAGCTAGTAGAGCTACTACTATGGAGATGCTGAATGA 1276
Query 1258 CAAATATTTCA-TCGAAGAGCCTCTTCCAGTTCCAGTTTCAGAGCTCTATGTGCCTCCGA 1316
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CAAATATTTAAGT-GAAGAGCCTCTTCCAGTTCCAGTTTCAGAGCTCTATGTGCCTCCGA 1335
Query 1317 CAAGGAGTTGG-CCAGATGAGGATTCTCC-ACGAATGTGGAATGATTACAGA-ACAATGG 1373
||| |||| || ||||||||||||||||| | ||| |||||||||||||||| | |||||
Sbjct 1336 CAATGAGT-GGACCAGATGAGGATTCTCCGA-GAAAGTGGAATGATTACAGAGA-AATGG 1392
Query 1374 ATTCAGATTCAGATTTTGACGGCTTTGGACCCATGAATGTAAAGCCTACCAGTAGTGGAT 1433
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 ATTCAGATTCAGATTTTGATGGCTTTGGACCCATGAATGTAAAGCCTACCAGTAGTGGAT 1452
Query 1434 TTACAATAGAATTCCCCTGACCCTGGTATTTAAG 1467
|||||||||||||||||||||| ||| |||||||
Sbjct 1453 TTACAATAGAATTCCCCTGACCTTGGCATTTAAG 1486
Score = 195 bits (105), Expect = 2e-48
Identities = 140/155 (90%), Gaps = 9/155 (6%)
Strand=Plus/Plus
Query 1541 TGAAAATGGTAACATTTACAATCGG-AAGTTGGTGTTAGCCTTTAGCTA-TAGCTAAAGA 1598
|||||||||||||||||||||| || |||| |||||||||||||||||| ||||| ||||
Sbjct 1920 TGAAAATGGTAACATTTACAATTGGAAAGTCGGTGTTAGCCTTTAGCTATTAGCTGAAGA 1979
Query 1599 GCTAGTTTT-TTGTTGCCCAGGCCAATCTTTACCCTATTTTTCATCTGAAGTAACAATGA 1657
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1980 GCTAGTTTTCTTGTTGCCCAGGCCATTCTTTACCCTATTTTTCATCTGAAGTAACAATGA 2039
Query 1658 AAAAGAATAAAAATCTATATTTACTCGAGTTTTGC 1692
|| | || | ||||||| ||||||||||||||
Sbjct 2040 AACA-AA-A----TCTATATATACTCGAGTTTTGC 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5