BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491863
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28940.1 | Symbols: | Phosphorylase superfamily protein | c... 1888 0.0
> AT4G28940.1 | Symbols: | Phosphorylase superfamily protein |
chr4:14274341-14277095 FORWARD LENGTH=1295
Length=1295
Score = 1888 bits (1022), Expect = 0.0
Identities = 1134/1188 (95%), Gaps = 7/1188 (1%)
Strand=Plus/Plus
Query 2 ATATGAGACTCACGATAAGCATATTATACAAAGGG---TAATTAAGAGAGAGTTAAAGAG 58
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 4 ATATGAGACTCACGATAAGCATA--GTACAAAGGGTAATAATTAAGAGAGAATTAAAGAG 61
Query 59 CGAGACGAAGTTATGGGATACTTCTTGATAGGTTTTCTTGTGGTTGTCTTGTCCGTGGGA 118
|| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 62 GGATAAGAAGTTATGGGACACTTCTTGATAGGTTTTCTTGTAGTTGTCTTGTCCGTGGGA 121
Query 119 AATGTTATTGAAGAAGCAAATGGTGAAATACCTCGAACCATATTGGGCAAAATAGAGAGG 178
||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 122 AATGTTATTGAAGAAGCAAATGGTGAAATACCTAGAACCACATTGGAAAAAATAGAGAGG 181
Query 179 ATTAATCAAAAAGGTCCTTATTTAGGG-ATTGTAGCTCCAAACAACTATGAACTTAACCC 237
|| |||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 182 ATGAATCAAAAGGGTCCTTATTT-GGGAATTGTAGCTCCAAACAACTATGAGCTTAACCC 240
Query 238 TCTTCTCGGTTCTAAAGCCTATGTCCCATCTTCTTCGTTGCCCTTCATCGATTTCGCAGG 297
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 241 TCTTCTCGGTTCTAAAGCCTATTTCCCATCTTCTTCGTTGCCTTTCATCGATTTCGCAGG 300
Query 298 TCGAAAATTCCGATTTGGAAAATTATCAAAACAACCAGTGGTAATAGTGATGTCGGGATT 357
||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 301 TCGAAAATTTCGATTTGGAAAATTATCAAACCAACCAGTGATAATCGTGATGTCGGGATT 360
Query 358 AGGAATGGTGAATGCAGGAGTAACAACACAATTACTGGTGAGCCTCTTTAGGCTGAAAGG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAATGGTGAATGCAGGAGTAACAACACAATTACTGGTGAGCCTCTTTAGGCTGAAAGG 420
Query 418 AGTTTTGCATTATGGAATCGCTGGAAACGCAGATATTAACCTTGAGATTGGTGACGTCAC 477
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 421 AGTTTTGCATTATGGAATCGCTGGAAACGCAGATGTTAACCTTGAGATTGGCGACGTCAC 480
Query 478 TATTCCTCAATATTGGGCACACTCTGGCCTTTGGAATTGGCAGAGGTATGGAGATGGGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATTCCTCAATATTGGGCACACTCTGGCCTTTGGAATTGGCAGAGGTATGGAGATGGGAT 540
Query 538 TGACAACGAATTAGCTCTCGAATCCGGTGGTGACTATACTCGGGAAGTTGGTTATCTCCA 597
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 541 TGACAACGAATTAGCTCTTGAATCCGGCGGAGACTATACTCGGGAAGTTGGTTATCTCCA 600
Query 598 GTTTTCCAAATATAGTAACCGAACCGATAACTTGCTTAATCGAGTTTGGTATCAACCGGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTTTCCAAATATAGTAACCGAACCGATAACTTGCTTAATCGAGTTTGGTATCAACCGGA 660
Query 658 AGAAATCTTTCCGGTCACCGGAACTCCTGAAGAGCGGCAACATGTGTTCTGGATTCCCGT 717
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAAATCTTCCCGGTCACCGGAACTCCTGAAGAGCGGCAACATGTGTTCTGGATTCCCGT 720
Query 718 TGACAAGTCCTACTTGAAACTTGCACGCAAACTCGAGGACACGAAGCTACCGCAGTGCGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 TGACAAGTCCTACTTGAAACTTGCACGCAAACTCGAGGACACGAAGCTACCGCAGTGTGT 780
Query 778 GAACACCACATGCCTCCCTCGACCACCGAAGGTCACTATCGTTAAACGTGGAATGAGTGC 837
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 781 TAACACCACATGCCTTCCTCGACCACCGAAGGTCACCATCGTTAAACGTGGTATGAGTGC 840
Query 838 AAGTGTTTTCATCGACAACGCAGCTTACCGGACTTTCCTCAACTCCAAGTTTAACGCCAC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGTGTTTTCATCGACAACGCAGCTTACCGGACTTTCCTCAACTCCAAGTTTAACGCCAC 900
Query 898 CGCCGTTGAAATGGAGAGCGCCGCCGTGGCTCTCATTTCCCACCAACAAAACCTCCCTTT 957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 CGCCGTTGAAATGGAGAGCGCCGCCGTGGCTCTCATTTCCCACCAGCAAAACCTCCCTTT 960
Query 958 CATTGTCATCCGTGCACTCTCCGATCTAGCTGGAGGCGGTTCCGACGTGTCCAACGAGGC 1017
||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||
Sbjct 961 CATCGTCATCCGTGCCCTCTCCGATCTCGCTGGCGGCGGCTCCGACGTCTCCAACGAGGC 1020
Query 1018 CAGCATATTCAGCAGCCTCGCCGCGGAAAACTCCGTCGATATTCTCGTTAAGTTCGTTGC 1077
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 CAGCATATTCAGCAGCCTCGCCGCAGAAAACTCCGTCGATATTCTCGTTAAGTTCGTTGC 1080
Query 1078 TTTGTTGCCTCCGCACGGAAGCAAGATTCAATCAGAATGATAAATTTGGATTAAGACTTT 1137
|||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TTTGTTGCCTCCACACGAAAGCAAGATTCAATCAGAATGATAAATGTGGATTAAGACTAA 1140
Query 1138 CGAGCGTGGAATAAGAGCATGTAACGGGAAAAGTAAGATGTATTATGT 1185
||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGAGTGTGGATTAAGAGCATGTAACGGGAAAAGTAAGATGTATTATGT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5