BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491864
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28920.1 | Symbols: | Protein of unknown function (DUF626) ... 1061 0.0
> AT4G28920.1 | Symbols: | Protein of unknown function (DUF626)
| chr4:14268415-14269885 REVERSE LENGTH=879
Length=879
Score = 1061 bits (574), Expect = 0.0
Identities = 798/899 (89%), Gaps = 43/899 (5%)
Strand=Plus/Plus
Query 1 ATGTCGGAGAACGATAGTAGCGAGAGTGATTGGGATACAGAAATGGACCCTGAAGAAGAA 60
||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1 ATGTCGGAGAACGATAGTAGCGAGAGTGA-T---AT--TGAAATGGACCCTGAAGAAGAA 54
Query 61 AAGGAGTATAGACGGCAAGTTGAAGAGTCCGA---TATTGATTGGTGCTT--TTCA-AAA 114
|| | ||||||||||||||||||||||||||| | |||| || || || || | | |
Sbjct 55 AAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTTGA-TGTTGATTACTTTAGATA 113
Query 115 T-TTGGGGT--TTCGATGTTGATTGCTTTAGAT-ATGCTATGCTTTAGATATACATATGA 170
| |||| | | ||| |||| |||| | | |||| | ||||| |||||
Sbjct 114 TGCTGGGATAAAGCCCTGTCCATTG--AAAGATGA-G-AATGC--T---TATACTTATGA 164
Query 171 CGTCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTCCTTCACAAGGGAACCAA 230
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 165 TATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTTCTTCACGAGGGAACCAA 224
Query 231 CCTCAAACTCTTGTGCATTCCCAAGTACAACACT-CTGGACATTGCGTTAACTTGT-GGG 288
|||||||||| ||||||||||||||||||||||| | |||||| | ||| || | |||
Sbjct 225 CCTCAAACTCATGTGCATTCCCAAGTACAACACTAAT-AACATTGGGGTAAGTTCTGGGG 283
Query 289 --TACTAC--C-TAACGTTGGAGGCAATGGACACACACAACAACTCTCCATGCACTTTTC 343
|||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 284 ACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAACTCTCCATGCACTTTTC 343
Query 344 AAACGTACGTAAGTGAGGTGG-GTCAAACTTCGGAACATGGATACCTTGTCGTACAGACA 402
|||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |||||
Sbjct 344 AAACGTACGTAAGTGA-ATGGTATCAAACTTCAGAACATGGATACCTTGTGGTAGAGACA 402
Query 403 AATATTGCCAGATTAAAAGTTCCTACTGGCCCTCATAATACTTCTATTGGACGTGGGTGG 462
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 403 TATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTGTATTGGACGTGGGTGG 462
Query 463 ATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGG 522
Query 523 TTGACAAACGATATGCTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGA- 581
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TTGACAAAAGATTTGTTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGAC 582
Query 582 ATTTCTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCGAACTGGAA 641
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 583 ATT-CTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCCAACTGGAA 641
Query 642 ATGGCATGCGACTCGGAAAAGCTGTGAAGAGTCGCCGCACCTGAAGCTCAAGGCCGACAA 701
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 642 ATGGCATGCGACTCGGAAGAGCTGTGAAGAGTCGCCGCACTTGAAGCTCAAGGCCAACAA 701
Query 702 TGCTATCTTCTACATGAGTTTCAAGGGCAGTGGTGATCATC--C-GAGTGGTAAGCAT-T 757
||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
Sbjct 702 CGCTATCTTCTACATGGGTTTCAAGGGCAGTGGTGATCATCATCCGAGTGGTAAGCATGT 761
Query 758 ACGAGTACCAAGCAATAGTACGGAAAACCATGGATGGAAAACCGGGACACATTCGTCTAG 817
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 762 -CGAGTACCAAACAATAGTACGGAAAGCCATGGATGGAAAACCGGGACACATTCGTCTAG 820
Query 818 AAGTTGACTCTTGGGAAGGCATACCAAGCGATCTGATTGGGGAGGATAAACCGCCCTAG 876
|||||||||||||| ||| ||||||||||||| | |||||||||||| |||||||||||
Sbjct 821 AAGTTGACTCTTGGCAAGCCATACCAAGCGATTTAATTGGGGAGGATGAACCGCCCTAG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5