BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491865
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ | chr4:1... 2209 0.0
> AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ | chr4:14264067-14266749
REVERSE LENGTH=1915
Length=1915
Score = 2209 bits (1196), Expect = 0.0
Identities = 1478/1610 (92%), Gaps = 35/1610 (2%)
Strand=Plus/Plus
Query 86 CGCCGCGAAGAAGCTCTAGGGTTTTTCTTCTGATCGTCTTCTTCCTCGGTGGTT--TCAG 143
||| ||||||||||||||||| || || ||||||||||||||||| || ||||
Sbjct 164 CGCTGCGAAGAAGCTCTAGGG------TT-TGTTCGTCTTCTTCCTCGGT--TTCATCAG 214
Query 144 AACTCTATAGGT-GTATCATAGAAGCGAGAAGGCGGATTCTGGGA-AATTGCTGGATTGT 201
||||| | |||| | | ||| ||||||||| | |||| ||| |||||||| |||||
Sbjct 215 AACTCAAAAGGTACT-TGGTAGGAGCGAGAAGAAAGTTTCT-GGAGAATTGCTGAATTGT 272
Query 202 GTCTTTCAATGGTTTTGTTTCTAAGGT-ACAATCCGAGGTT-TCTGAGGGTACTCTTAAG 259
|||||||||||||||||||||||| | ||| | || || | ||| ||| |||| |||
Sbjct 273 TTCTTTCAATGGTTTTGTTTCTAAGATGGTAAT-CAAGATTGT-TGACGGTGCTCTGAAG 330
Query 260 ATCCGTTGAGCTGCTCAGTGTTTGCTT-TAAAGTTTGAGAGAAAAATGGAGGATGATAAT 318
||| ||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||
Sbjct 331 ATCTGTTGACCTGCTCAGAGTTTGCTTAAAAAGTTTGAGA-AAAAATGGACGATGATAAT 389
Query 319 GGGCTCGAGCTCAGCTTGGGTCTTTCTTGTGGAGGATCATCAGGAAAAGCTAAGGGTAAC 378
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 390 GGGCTCGAGCTCAGCTTGGGTCTTTCTTGTGGAGGATCAACAGGAAAAGCTAAGGGTAAC 449
Query 379 AATACTAATAATGCTGGAAGCTCCTCAGAGAACCACAGGGCAGAAGGAGGTGATAGAAGC 438
|||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 450 AATAATAATAATGCTGGAAGCTCCTCAGAGAACTACAGGGCAGAAGGAGGCGATAGAAGT 509
Query 439 GCTAAAGTGATTGATGACTTTAAGAATTTCCTGCATCCAACTTCTCAAAGACCTGCAGAG 498
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 510 GCTAAAGTGATTGATGACTTTAAGAACTTCCTGCATCCAACTTCTCAAAGACCTGCAGAG 569
Query 499 CCGAGTTCTGGTTCTCAGAGAAGCGATTCGGGTCAACAACCT-CAGCAGAATTTCTTCAA 557
||||||||||||||||||||||| |||||||||||||| ||| || || |||||||||||
Sbjct 570 CCGAGTTCTGGTTCTCAGAGAAGTGATTCGGGTCAACAGCCTCCA-CAAAATTTCTTCAA 628
Query 558 TGACCTCTCAAAAGCTCCTATC-ACTGACGG-TGAAGCTTCCACGAAATCTTTGTGGGTG 615
|||||||||||||||||||| | ||||| || ||||||||| |||||| |||||||||||
Sbjct 629 TGACCTCTCAAAAGCTCCTA-CAACTGA-GGCTGAAGCTTCTACGAAACCTTTGTGGGTG 686
Query 616 GAGGATGAGACACGGAAAGAAGCTGGAAACAAAAGAAAGTTTGGGTTCCCGGGGATGAAT 675
||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 687 GAGGATGAGTCACGGAAAGAAGCAGGGAACAAAAGAAAGTTCGGGTTCCCGGGGATGAAT 746
Query 676 GATGAAAAGAAGAAAGACAAGGACTCGTCACATGTTGATATGCATGAGAAGAAGACAAAA 735
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 747 GATGATAAGAAAAAAGAGAAGGACTCGTCTCATGTTGATATGCATGAGAAGAAGACAAAA 806
Query 736 GCATCCCATGTTTCAACCGCGACAGATGAAGGATCAACAGCTGATAACGAAGATGTAGCA 795
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 807 GCATCCCATGTTTCAACTGCGACAGATGAAGGATCAACAGCTGAAAACGAAGATGTAGCA 866
Query 796 GAGTCTGAAGTAGGTGGTGGTTCTTCTTCCAACCACGCAAAGGAGGTGGTTCGTCCTCCC 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GAGTCTGAAGTAGGTGGTGGTTCTTCTTCCAACCACGCAAAGGAGGTGGTTCGTCCTCCT 926
Query 856 CCTGATACAAACGTTGTGGACAACTTAACCGGTCAAAGAAGGAGCAACCATGGCGGATCT 915
||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 927 ACTGATACAAACATTGTGGACAACTTAACTGGTCAAAGGAGGAGCAACCATGGTGGATCT 986
Query 916 GGCACCGAAGAGTTTACAATGCGCAACATGAGTTACACTGTACCTTTCACGGTTCATCCG 975
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 987 GGCACTGAAGAGTTTACAATGCGCAACATGAGTTACACCGTACCTTTCACAGTTCATCCG 1046
Query 976 CAAAATGTCGTCACTACTATGCCTTTCTCTTTACCGACAAAAGAGTCTGGACAACACGAA 1035
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1047 CAAAATGTCGTCACTAGTATGCCTTACTCTTTACCGACAAAAGAGTCTGGACAACACGCA 1106
Query 1036 GCAGCTACAAGTCTATTGCAGCCTAATGCTAGTGCTGGAAATCTCCCAATTATGTTTGGA 1095
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 1107 GCAGCTACAAGTCTATTGCAGCCTAATGCTAATGCTGGAAATCTCCCGATTATGTTCGGA 1166
Query 1096 TACTCACCGGTCCAGCTCCCTATGCTAGATAAGGACGGTTCAGGCGGGATTGTCGCCCTT 1155
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1167 TACTCACCAGTCCAGCTCCCTATGCTAGATAAGGACGGTTCAGGAGGGATTGTCGCACTT 1226
Query 1156 TCTCAATCTCCATTTGCTGGAAGAGGTCCATCAAACTCAGCTACTGCGAAAGGCGAGGGC 1215
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 1227 TCTCAATCTCCATTTGCTGGAAGAGTTCCATCAAACTCAGCTACTGCAAAAGGCGAAGGC 1286
Query 1216 AAACAGCCTGTTGCAGAAGAAGGTTCATCTGAGGATGCATCAGAGCGGCCAACAGGAGAC 1275
||||| ||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 1287 AAACAACCTGTTGCAGAAGAAGGTTCATCCGAGGATGCATCAGAACGACCAACGGGAGAC 1346
Query 1276 AACAACAACAAT-AATACCGCTTTCTCTTTCGACTTTTCCGCCATAAAACCCGGAATGGC 1334
|||| |||| | |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1347 AACAGCAACC-TCAATACCGCTTTCTCTTTCGACTTTTCTGCCATAAAACCTGGAATGGC 1405
Query 1335 TGCAGATGTGAAGTTTGGAGGATCGGGGGCACGTCCTAACCTACCATGGGTCTCAACCAC 1394
||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 1406 AGCAGATGTGAAGTTTGGAGGATCCGGGGCACGTCCCAACTTACCGTGGGTCTCAACCAC 1465
Query 1395 TGGTTCAGGCCCGCACGGTCGGACAATCTCAGGTGTCACATACCGGTACAATGCAAACCA 1454
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1466 TGGTTCAGGCCCACACGGACGGACAATCTCAGGTGTCACATACCGGTACAACGCAAACCA 1525
Query 1455 GATCAAAATCGTATGCGCTTGCCACGGCTCGCATATGTCGCCAGAGGAGTTTGTACGGCA 1514
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1526 GATCAAAATCGTATGCGCTTGCCACGGCTCGCACATGTCACCGGAGGAGTTTGTACGGCA 1585
Query 1515 CGCAAGCGAGGAATTCGTTAGCCCAGAATCATCCATGGGAATGAC-GACCGCGTCAGCTC 1573
|||||||||||| | |||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1586 CGCAAGCGAGGAGTACGTTAGCCCAGAATCATCCATGGGAATGACTG-CAGCGTCAGCTC 1644
Query 1574 ACAGCTGAAAATTCGCCGCCGGAAAAAA---TGTCTGAAATCATGTAAACAAATGGAAGG 1630
||| ||||||| || || |||||||||| ||||||||||| |||||||||||||||||
Sbjct 1645 ACACCTGAAAAGTCACCACCGGAAAAAAAGATGTCTGAAATCTTGTAAACAAATGGAAGG 1704
Query 1631 GTTTTGTAATGAGTTTCTTTTTGGAACATACATTTTATTATGTTTAGTCG 1680
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 GTTT-GTAATGAGTTTCTTTTTGGAACATACATTTTATTATGTTTAGTCG 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5