BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491868
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28890.1 | Symbols: | RING/U-box superfamily protein | chr4... 1964 0.0
> AT4G28890.1 | Symbols: | RING/U-box superfamily protein | chr4:14256333-14257735
REVERSE LENGTH=1403
Length=1403
Score = 1964 bits (1063), Expect = 0.0
Identities = 1232/1312 (94%), Gaps = 17/1312 (1%)
Strand=Plus/Plus
Query 1 ATGTATCAAATCTTCTTCTTCTTTCTTCCACTCCTCCACAGTTACCCCCATGTCTATGCT 60
||||||||||||||||| ||||||||||| ||||||||||||| ||| || |||
Sbjct 1 ATGTATCAAATCTTCTTTTTCTTTCTTCCTCTCCTCCACAGTT------ATGCCTCTGCC 54
Query 61 CAGCCTCCTCCTCCGTTCAGAAACGGTGACCTCGTCGCCAATTTCGAGCCGAGTTTAGCC 120
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 55 CAGACTCCTCCTCCGTTCAGAAACGGTGACCTCGTCGCAAATTTTGAGCCGAGTTTAGCC 114
Query 121 GTCGTCACCGGAGTTCTCGCTATCATGTTCGCACTCACGTTCGTCCTCCTCGTCTACGCT 180
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 115 GTCGTCACCGGAGTTCTCGCCATCATGTTCGCACTCACTTTCGTCCTCCTCGTCTACGCT 174
Query 181 AAGTGCTGCCACATCGATCTCCGATCAGATTCTGGCGACAGAAGAAGGCATGATCGTCGG 240
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 175 AAGTGCTGCCACATCGATCTCCGATCAGGTTCCGGCGACAGAAGAAGGCACGATCGCCGG 234
Query 241 CTCCGCCAAGGAATATTCTTTAACCGGTCAACGACTTCATCGGATCGATTCTCCGGTTTA 300
||| | ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 235 CTCAGACAAGGAATATTCTTTAACCGGTCAACGGCATCATCGGATCGATTCTCTGGTTTA 294
Query 301 GACAAAACAGCAATCGAGTCTCTTCCTCTGTTTAGATTCTCTGCTTTGAAAGGATCAAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GACAAAACAGCAATCGAGTCTCTTCCTCTGTTTAGATTCTCTGCTTTGAAAGGATCAAAA 354
Query 361 CAAGGGCTTGATTGTTCTGTTTGTTTGTCTAAATTCGAAAGTATTGAGATTCTTAGATTG 420
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 355 CAAGGTCTTGATTGTTCTGTCTGTTTGTCTAAATTCGAAAGTGTTGAGATTCTTAGATTG 414
Query 421 TTGCCTAAGTGTAGACACGCTTTCCACATCGGATGTATCGATCAGTGGCTTGAGCAACAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTGCCTAAGTGTAGACACGCTTTCCACATCGGATGTATCGATCAGTGGCTTGAGCAACAC 474
Query 481 GCAACGTGTCCTCTCTGCAGAGATAGAGTCTCCATGGAAGAAGATTCCTCTGTTTTCTCT 540
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 475 GCAACTTGTCCTCTTTGCAGAGATAGAGTCTCAATGGAAGAAGATTCCTCTGTTCTCACT 534
Query 541 AACGGAAATAGTTTCAGGTTCTTGAATCAGTCTGAGATTAGAGAAGATTCGAGCTTGGAG 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AACGGAAACAGTTTCAGGTTCTTGAATCAGTCTGAGATTAGAGAAGATTCGAGCTTGGAG 594
Query 601 CTTTACATagagagagaagaagaagaagatagaagacagagagaCGAACTTGGTGGGTCG 660
|||||||| |||||||||||||||||||| |||| ||| ||||| |||||| ||||||||
Sbjct 595 CTTTACATCGAGAGAGAAGAAGAAGAAGAAAGAATACACAGAGAAGAACTTAGTGGGTCG 654
Query 661 TCGAGATTTAGCATCGGAGAGAGTTTTAGGAAGATTCTGAAATTAGGTAATAAAGAAAAA 720
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 655 TCGAGATTCAGCATCGGAGAGAGTTTCCGGAAGATTCTGAAATTAGGTAATAAAGAAAAA 714
Query 721 ACGTTACTTGATGAACACGGGAACAGCGATAAAGACGAGAAGAAGCTTATGCATAAGTTC 780
||||||||||||||||||| |||| | ||||||| ||||||||||||||||| ||||||
Sbjct 715 ACGTTACTTGATGAACACGTGAAC-G--ATAAAGATGAGAAGAAGCTTATGCACAAGTTC 771
Query 781 AATCATAGGATCGTTGTGTCGGATGTTGTTTTTAAGAATCGTTGGAGCAACGTGAGTTCG 840
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 772 AATCATAGGATCGTTGTGTCGGATGTTGTTTTCAAGAATCGTTGGAGCAACGTGAGTTCA 831
Query 841 TCTGATTTGATGTTTTTGAATTCAGAGATGGTTAATTCGATTTCTAGTGAGAGATTTT-T 899
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 832 TCAGATTTGATGTTTTTGAATTCCGAGATGGTTAATTCGATTTCTAGCGAGAGATTTTCT 891
Query 900 GTCGATTG-ATCGA-GCGAAGAGAGGGGATGAAGAGGACCAGATAGGTATCTTGCGGATC 957
|| |||| ||| | | ||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 892 -TC-ATTGGATC-ATGTGAAGAGAGGAGATGAAGAGGATCAGATAGGTATCTTGCGAATC 948
Query 958 AAGGAAGAGATGGAAGCGAAGAGAATGTTGGAGAACAAGTTAACTTCGATGAAAACTATG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 949 AAGGAAGAGATGGAAGCGAAGAGAATGTTGGAGAACAAGTTAACTTCGATGACAACTATG 1008
Query 1018 TTTTCGC-CGGAAAACGGAGACTCTGGTTCGAAATCTAGAAGTGTTATGATCGAACCGGG 1076
||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1009 TTTTC-CTCGGAAAACGGAGACTCTGGTTCGAAATCAAGAAGCGTTATGATCGAACCAGG 1067
Query 1077 ACGAAGATCGGTGTCTGATATCACTGCGGTTCCTAGACTCAGTATATCGGTTCATAGAGA 1136
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1068 ACGAAGATCGGTGTCTGACATCACTGCGGTTCCTAGACTCAGTATATCGATTCATGGAGA 1127
Query 1137 TTGCAGCGGTTCAGCCGCAGGGACTGCGTCTGCGTTACAAAACGGTGGAAATGAGACGGA 1196
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1128 TTGCAGCGGTTCAGCCGCAGAGACTGCGTCTGCGTTACAAAACGGTGGGAATGAGACGGA 1187
Query 1197 GGAGAGAAGACGGCGTTTATGGCTGCCGATCGCTAGAAAAACCGCTCAATGGTTTGCTAA 1256
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1188 GGAGAGAAGACGGCGTTTGTGGCTGCCGATCGCTAGAAAAACTGCTCAATGGTTTGCTAA 1247
Query 1257 CAGAGAAAAAAGAAATCAAATTAACACGACACACCAACACTTTGATGTATAG 1308
|||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1248 CAGAGAAAAAAGAAGTCAAATTAACACAACACACCAACACTTTGATGTTTAG 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5