BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491869
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28880.1 | Symbols: ckl3 | casein kinase I-like 3 | chr4:142... 2645 0.0
AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:142... 1724 0.0
> AT4G28880.1 | Symbols: ckl3 | casein kinase I-like 3 | chr4:14251214-14254432
FORWARD LENGTH=1769
Length=1769
Score = 2645 bits (1432), Expect = 0.0
Identities = 1592/1668 (95%), Gaps = 16/1668 (1%)
Strand=Plus/Plus
Query 25 TAAACAACAACCCTAAATCCTTATCTCTATCATTGCGCATGATCCAGATTCGTTTTTGAT 84
||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||
Sbjct 68 TAAACAACAACCCTAAATCCTTATCTCTATCCTTGCGCTTGATCCAGATTCGGTTCTGAT 127
Query 85 CGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATCGGCGG 144
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 128 TGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATCGGCGG 187
Query 145 TGGTTCTTTCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGT 204
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TGGTTCGTTCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGT 247
Query 205 TAAGATCGAGAACAGTAAAACAAAGCATCCCCAACTTCTCTATGAAGCCAAGCTATATAG 264
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 248 TAAGATCGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATAG 307
Query 265 AATTCTTGAAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTGGATGGAACAGA 324
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 308 AATTCTTGAAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTTGATGGAACAGA 367
Query 325 GAATGCTTTAGTGATGGATTTGCTAGGGCCAAGTCTCGAAGATCTATTCGTGTATTGTGG 384
|||||||||||||||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct 368 GAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGG 427
Query 385 GAGGAAATTCTCACCTAAGACAGTCTTGATGTTGGCTGATCAAATGCTGACAAGAATAGA 444
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 428 GAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGCTAACAAGAATAGA 487
Query 445 ATTTGTACATTCCAAAGGATATCTGCATAGAGATATCAAACCTGATAACTTCCTCATGGG 504
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 488 ATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCTCATGGG 547
Query 505 CCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTCGGACTTGCTAAAAGATATCG 564
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 548 CCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATATCG 607
Query 565 TGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGC 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGC 667
Query 625 ACGATATGCTAGCTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGACCTAGA 684
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 668 ACGATATGCAAGTTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGATCTAGA 727
Query 685 ATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAA 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAA 787
Query 745 GGCTGTTGACAAGAAGCAAAAATATGATAAAATCTGTGAGAAGAAGATATCAACTCCTAT 804
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 788 GGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGATATCAACTCCCAT 847
Query 805 TGAGGTTCTATGCAAAAATCACCCTGTGGAGTTTGCTTCATATTTTCATTACTGCCATAC 864
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 848 TGAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTCATTACTGCCATAC 907
Query 865 ACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 ACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATT 967
Query 925 TTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATTATAAAGTATCAACA 984
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 968 TTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATCATAAAGTATCAACA 1027
Query 985 AGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGTAATGCTCGTGCAAT 1044
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1028 AGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGCAATCCTCGTGCAAT 1087
Query 1045 GCCAATGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTC 1104
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GCCAGTGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTC 1147
Query 1105 TGAACGCGTCAGATCAGCTAATGCCATTGG-CC---C--ACAGATAAATAATAATACTGC 1158
||||||||||||||| |||||||||||||| || | |||||||||||||||||||||
Sbjct 1148 TGAACGCGTCAGATCGGCTAATGCCATTGGTCCAAGCCCACAGATAAATAATAATACTGC 1207
Query 1159 TGCAGGAAGGACTCTGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATCCAC 1218
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TGCAGGGAGGACTCCGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATCCAC 1267
Query 1219 TTCAGTATCTCCTGCGGGTACCTCAAAAAGAAATGTCGGACCTGAGATCTCAAATTCTGG 1278
|||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1268 TTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCGGACCCGAAACCTCAAATTCTGG 1327
Query 1279 GCATGGGAGTGGGAATAGAACCGGCTGGACTTCCTCATTCATGTCTCCAGAGAAATGATG 1338
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1328 ATATGGGAGTGGGAATAGAACTGGTTGGACTTCGTCATTCATGTCTCCAGAGAAATGATG 1387
Query 1339 CAAAGAAAATGTAGCTTTATCCTGAAACGGTGAGTGAGATTATGCGCTGTTACTGTGAGG 1398
|||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||
Sbjct 1388 CAAAGAAAATGTAGCTTTTTCCTGAAATGGTGAGTGAGATGATGCGCTGTTAATGTGACT 1447
Query 1399 CA-TGCTCTTA-TTGCACCTCTGCAACTACAGCAGAAATCAGAACTCGGTGTCACTAACA 1456
| ||| |||| || |||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1448 CCGTGCCCTTAATT-CACCTCTGAAACTACAGCAGAAATCAGAACTTGGTGTCACTAACA 1506
Query 1457 CCTTTGTATCTCCTCCACCTTTGGCTGGAAGAAAAATGCAAATGGTTTCTATGTAAATTC 1516
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1507 CCTTTGTATCTCCTCCACCTTTGGCTGGAAGAAAGATGCAA-TGGTTTCTATGTAAATTC 1565
Query 1517 TCTGAAGTGTGTG-G-ACAAGAAGGCGTTGGTTGAAGCATTTGTGTTTACACACACAAGA 1574
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TCTGAAGTGTGTGTGGACAAGAAGGCGTTGGTTGAAGCATTTGTGTTTACACACACAAGA 1625
Query 1575 CATGAA-GTGTATGTTTGCTTTTTCATTCAA-GATTTTCCCCAACCTTTGTATAATTCTT 1632
|||||| |||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 1626 CATGAAAGTGTATGTGTGCTTTT-CATTCAAAGATTTCCCCCAACCTTTGTATAATTCTT 1684
Query 1633 ACACCCGGATGTGTAATCGTTGTTATGTGATTCATATATATCATTTTT 1680
|||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1685 ACACCCGGATGTGTAATC-TTGTTATGTGATTCATACATATCATTTTT 1731
> AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:14246283-14249544
FORWARD LENGTH=1668
Length=1668
Score = 1724 bits (933), Expect = 0.0
Identities = 1196/1323 (90%), Gaps = 17/1323 (1%)
Strand=Plus/Plus
Query 35 CCCTAAATCCTTATCTCTAT-CATTGCGCATGATCCAGATTCGTTTTTGATCGGAGCTGC 93
|||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct 16 CCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGTGATCGGAGCTGC 75
Query 94 CATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATCGGCGGTGGTT-CTT 152
||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 76 CATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCGGTGGTTCCTT 135
Query 153 TCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGATCG 212
| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 136 T-GGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTGTTAAGATCG 194
Query 213 AGAACAGTAAAACAAAGCATCCCCAACTTCTCTATGAAGCCAAGCTATATAGAATTCTTG 272
|||||||||||||||| ||||| || |||||||||||||| ||||||||||||| |||||
Sbjct 195 AGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAGCTAAGCTATATAGAACTCTTG 254
Query 273 AAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTGGATGGAACAGAGAATGCTT 332
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 255 AAGGAGGAAGTGGAATTCCGCGCATAAGATGGTTTGGAGTTGATGGAACAGAGAATGCTT 314
Query 333 TAGTGATGGATTTGCTAGGGCCAAGTCTCGAAGATCTATTCGTGTATTGTGGGAGGAAAT 392
|||||||||||||||| || ||||||||||||||||| ||||| || |||||||| ||||
Sbjct 315 TAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGAAAAT 374
Query 393 TCTCACCTAAGACAGTCTTGATGTTGGCTGATCAAATGCTGACAAGAATAGAATTTGTAC 452
| ||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 375 TTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGCTAACTAGAATAGAATATGTAC 434
Query 453 ATTCCAAAGGATATCTGCATAGAGATATCAAACCTGATAACTTCCTCATGGGCCTAGGTC 512
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 435 ATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATAACTTTCTCATGGGCCTAGGCC 494
Query 513 GGAAAGCAAATCAGGTTTATCTAATTGACTTCGGACTTGCTAAAAGATATCGTGATGCCA 572
| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 495 GCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGGCCAAAAGATATCGTGATGCCA 554
Query 573 ACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGCACGATATG 632
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 555 ACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATTTAACAGGAACTGCACGATATG 614
Query 633 CTAGCTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGACCTAGAATCGCTGG 692
| || ||||||||||||||||| ||||||||| || |||||||||||||||| || || |
Sbjct 615 CAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGACGGGATGACCTAGAGTCTCTTG 674
Query 693 GATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAAGGCTGTTG 752
|||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 675 GATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCATGGCAGGGTCTTAAGGCTGTTG 734
Query 753 ACAAGAAGCAAAAATATGATAAAATCTGTGAGAAGAAGATATCAACTCCTATTGAGGTTC 812
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 735 ACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGATATCAACTCCTATTGAGGTTC 794
Query 813 TATGCAAAAATCACCCTGTGGAGTTTGCTTCATATTTTCATTACTGCCATACACTGACAT 872
||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 795 TATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTCATTATTGCCACACACTGACAT 854
Query 873 TTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTTTCGCGGG 932
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 855 TTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTCTCACGGG 914
Query 933 AAGGATATGAGTTCGACTATATATTTGACTGGACTATTATAAAGTATCAACAAGCACAGA 992
||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 915 AAGGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGA 974
Query 993 AATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGTAATGCTCGTGCAATGCCAATGG 1052
|| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 975 AAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGG 1034
Query 1053 ACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTCTGAACGCG 1112
|||||||||||||||| |||||| | || ||||| |||||||| | | |||||| || |
Sbjct 1035 ACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTG 1094
Query 1113 TCAGATCAGCTAATGCCATTGGCCCACAGATAA-ATAATAATACTGCTGCAGGAAGGACT 1171
||||| | |||||||||| ||| ||| || | | | |||||| |||| ||| |||| |
Sbjct 1095 TCAGACCGGCTAATGCCAGTGGTCCA-AGCCCACAGATTAATACCGCTGTAGGGAGGAGT 1153
Query 1172 CTGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATC--C-ACTTCAGTATCT 1228
||||| |||||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct 1154 CTGGGTTTTGATCAA---GTCCACAAGAATATGAACATGCCATCATCCACTTCATTATCT 1210
Query 1229 CCTGCGGGTACCTCAAAAAGAAATGTCGGACCTGAGATCTCAAATTCTGGGCATGGGAGT 1288
||||||||||||||||||||||||||| |||| || | ||||||||||||| ||||||
Sbjct 1211 CCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGC 1270
Query 1289 GGGAATAGAACCGGC--T-GGACTTC-CTCATTCATGTCTCCAGAGAAATGATGCAAAGA 1344
||||||| ||||||| | ||||||| | |||||||||| || | ||||||||||||| |
Sbjct 1271 GGGAATAAAACCGGCGGTTGGACTTCAC-CATTCATGTCACCGGGGAAATGATGCAAA-A 1328
Query 1345 AAA 1347
|||
Sbjct 1329 AAA 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5