BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491871 Length=1381 Score E Sequences producing significant alignments: (Bits) Value AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:142... 1402 0.0 AT4G28880.1 | Symbols: ckl3 | casein kinase I-like 3 | chr4:142... 1173 0.0 > AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:14246283-14249544 FORWARD LENGTH=1668 Length=1668 Score = 1402 bits (759), Expect = 0.0 Identities = 928/1007 (92%), Gaps = 21/1007 (2%) Strand=Plus/Plus Query 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGTC-AAGCTATACAGAATTCT 290 ||||||||||||||||| |||||||| ||||||||||||| | |||||||| |||| ||| Sbjct 194 GAGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAG-CTAAGCTATATAGAACTCT 252 Query 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350 || | ||| | | | | ||||||||||||||||| ||||||||||||| Sbjct 253 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAGATGGTTTGGAG 293 Query 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410 ||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| | Sbjct 294 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 353 Query 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470 |||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 354 TCGTCTACTGTGGGAGAAAATTTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGC 413 Query 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530 | || |||||||||| |||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 414 TAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATA 473 Query 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590 |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| | Sbjct 474 ACTTTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGG 533 Query 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 534 CCAAAAGATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATT 593 Query 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710 | |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| Sbjct 594 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGAC 653 Query 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 654 GGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 713 Query 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 714 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGA 773 Query 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890 |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 774 TATCAACTCCTATTGAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTC 833 Query 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 834 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTT 893 Query 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 894 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTATATATATGACTGGACTATTA 953 Query 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070 |||||||||||||| |||||||||||| || || ||||||||| |||||||||||||||| Sbjct 954 TAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTA 1013 Query 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130 ||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct 1014 ATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATG 1073 Query 1131 AAGCACAAGTCTCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGATTA 1190 |||| ||||||||||||||||||||| | |||||||||| |||||| |||||||||||| Sbjct 1074 AAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTA 1133 Query 1191 ATACCGCTACAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1237 |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1134 ATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1180 Score = 279 bits (151), Expect = 4e-74 Identities = 178/191 (93%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1 GAAGCAAAATAGCCCTAAATTCATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 60 |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4 GAAGTAAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 63 Query 61 GATCGGAGCTACCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATTGG 120 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 64 GATCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGG 123 Query 121 CGGTGTTTCATTTGGAGAAAATTTTC-TGGCTATGCACGTCGATACCTTCGAGATTGTAG 179 ||||| ||| |||||||| | ||||| | |||| |||| ||||||||||||||||||||| Sbjct 124 CGGTGGTTCCTTTGGAGAGA-TTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAG 182 Query 180 CTGTTAAGATC 190 ||||||||||| Sbjct 183 CTGTTAAGATC 193 > AT4G28880.1 | Symbols: ckl3 | casein kinase I-like 3 | chr4:14251214-14254432 FORWARD LENGTH=1769 Length=1769 Score = 1173 bits (635), Expect = 0.0 Identities = 895/1017 (88%), Gaps = 32/1017 (3%) Strand=Plus/Plus Query 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGTC-AAGCTATACAGAATTCT 290 |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| Sbjct 255 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAG-CTAAGCTATATAGAATTCT 313 Query 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350 || | ||| | | | | ||||||||||||||||| | ||||||||||| Sbjct 314 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAAATGGTTTGGAG 354 Query 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410 ||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| | Sbjct 355 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 414 Query 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470 |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 415 TCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 474 Query 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530 | ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| Sbjct 475 TAACAAGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATA 534 Query 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590 |||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| Sbjct 535 ACTTCCTCATGGGCCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTTGGACTTG 594 Query 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650 ||||||||||||| ||||||| |||||||||||||||||| || |||||||||||||||| Sbjct 595 CCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATT 654 Query 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710 | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 655 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGAATTGAGCAAAGTCGAC 714 Query 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770 ||||||| ||||| || || |||||||| |||||||| ||| |||||||||| ||||||| Sbjct 715 GGGATGATCTAGAATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCAT 774 Query 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830 |||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| Sbjct 775 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGA 834 Query 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890 |||||||||| |||| ||| ||||||||||| ||||| ||||||||||| |||||||||| Sbjct 835 TATCAACTCCCATTGAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTC 894 Query 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950 |||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct 895 ATTACTGCCATACACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTT 954 Query 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010 ||||||||||||| || ||||||||||||||||| |||| ||||| |||||||||||| | Sbjct 955 TTCGTGATTTATTTTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATCA 1014 Query 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070 |||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||| | Sbjct 1015 TAAAGTATCAACAAGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGCA 1074 Query 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130 || ||||||||||||| |||| ||||| |||||||| |||||| | |||||||| ||| Sbjct 1075 ATCCTCGTGCAATGCCAGTGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATG 1134 Query 1131 AAGCACAAGTC-TCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGAT- 1188 |||| | || | ||||| || |||||| | |||||||||| |||||| |||||||||| Sbjct 1135 AAGC-CGAGGCCTCTGAACGCGTCAGATCGGCTAATGCCATTGGTCCAAGCCCACAGATA 1193 Query 1189 --TAATAC--C-GCTACAGGGAGGAGTCTGGGTTTTGATCAA---GTCCACAAGAAT 1237 ||||| | ||| ||||||||| || ||| |||||||| |||||||||||| Sbjct 1194 AATAATAATACTGCTGCAGGGAGGACTCCGGGGTTTGATCACCCTGTCCACAAGAAT 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68021738475 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5