BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491871
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:142... 1402 0.0
AT4G28880.1 | Symbols: ckl3 | casein kinase I-like 3 | chr4:142... 1173 0.0
> AT4G28860.1 | Symbols: ckl4 | casein kinase I-like 4 | chr4:14246283-14249544
FORWARD LENGTH=1668
Length=1668
Score = 1402 bits (759), Expect = 0.0
Identities = 928/1007 (92%), Gaps = 21/1007 (2%)
Strand=Plus/Plus
Query 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGTC-AAGCTATACAGAATTCT 290
||||||||||||||||| |||||||| ||||||||||||| | |||||||| |||| |||
Sbjct 194 GAGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAG-CTAAGCTATATAGAACTCT 252
Query 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350
|| | ||| | | | | ||||||||||||||||| |||||||||||||
Sbjct 253 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAGATGGTTTGGAG 293
Query 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410
||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| |
Sbjct 294 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 353
Query 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470
|||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 354 TCGTCTACTGTGGGAGAAAATTTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGC 413
Query 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530
| || |||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 414 TAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATA 473
Query 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590
|||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 474 ACTTTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGG 533
Query 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 534 CCAAAAGATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATT 593
Query 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710
| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 594 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGAC 653
Query 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 654 GGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 713
Query 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 714 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGA 773
Query 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 TATCAACTCCTATTGAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTC 833
Query 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTT 893
Query 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 894 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTATATATATGACTGGACTATTA 953
Query 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070
|||||||||||||| |||||||||||| || || ||||||||| ||||||||||||||||
Sbjct 954 TAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTA 1013
Query 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130
||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 1014 ATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATG 1073
Query 1131 AAGCACAAGTCTCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGATTA 1190
|||| ||||||||||||||||||||| | |||||||||| |||||| ||||||||||||
Sbjct 1074 AAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTA 1133
Query 1191 ATACCGCTACAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1237
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 ATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1180
Score = 279 bits (151), Expect = 4e-74
Identities = 178/191 (93%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 GAAGCAAAATAGCCCTAAATTCATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 60
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAAGTAAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 63
Query 61 GATCGGAGCTACCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATTGG 120
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 64 GATCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGG 123
Query 121 CGGTGTTTCATTTGGAGAAAATTTTC-TGGCTATGCACGTCGATACCTTCGAGATTGTAG 179
||||| ||| |||||||| | ||||| | |||| |||| |||||||||||||||||||||
Sbjct 124 CGGTGGTTCCTTTGGAGAGA-TTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAG 182
Query 180 CTGTTAAGATC 190
|||||||||||
Sbjct 183 CTGTTAAGATC 193
> AT4G28880.1 | Symbols: ckl3 | casein kinase I-like 3 | chr4:14251214-14254432
FORWARD LENGTH=1769
Length=1769
Score = 1173 bits (635), Expect = 0.0
Identities = 895/1017 (88%), Gaps = 32/1017 (3%)
Strand=Plus/Plus
Query 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGTC-AAGCTATACAGAATTCT 290
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 255 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAG-CTAAGCTATATAGAATTCT 313
Query 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350
|| | ||| | | | | ||||||||||||||||| | |||||||||||
Sbjct 314 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAAATGGTTTGGAG 354
Query 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410
||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| |
Sbjct 355 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 414
Query 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 TCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 474
Query 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530
| ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 475 TAACAAGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATA 534
Query 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590
|||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||
Sbjct 535 ACTTCCTCATGGGCCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTTGGACTTG 594
Query 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650
||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 595 CCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATT 654
Query 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 655 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGAATTGAGCAAAGTCGAC 714
Query 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770
||||||| ||||| || || |||||||| |||||||| ||| |||||||||| |||||||
Sbjct 715 GGGATGATCTAGAATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCAT 774
Query 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830
|||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 775 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGA 834
Query 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890
|||||||||| |||| ||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 835 TATCAACTCCCATTGAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTC 894
Query 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950
|||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 895 ATTACTGCCATACACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTT 954
Query 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010
||||||||||||| || ||||||||||||||||| |||| ||||| |||||||||||| |
Sbjct 955 TTCGTGATTTATTTTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATCA 1014
Query 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070
|||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||| |
Sbjct 1015 TAAAGTATCAACAAGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGCA 1074
Query 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130
|| ||||||||||||| |||| ||||| |||||||| |||||| | |||||||| |||
Sbjct 1075 ATCCTCGTGCAATGCCAGTGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATG 1134
Query 1131 AAGCACAAGTC-TCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGAT- 1188
|||| | || | ||||| || |||||| | |||||||||| |||||| ||||||||||
Sbjct 1135 AAGC-CGAGGCCTCTGAACGCGTCAGATCGGCTAATGCCATTGGTCCAAGCCCACAGATA 1193
Query 1189 --TAATAC--C-GCTACAGGGAGGAGTCTGGGTTTTGATCAA---GTCCACAAGAAT 1237
||||| | ||| ||||||||| || ||| |||||||| ||||||||||||
Sbjct 1194 AATAATAATACTGCTGCAGGGAGGACTCCGGGGTTTGATCACCCTGTCCACAAGAAT 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5