BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491872
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28850.1 | Symbols: XTH26, ATXTH26 | xyloglucan endotransglu... 1279 0.0
> AT4G28850.1 | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase
26 | chr4:14244295-14245957 FORWARD LENGTH=1096
Length=1096
Score = 1279 bits (692), Expect = 0.0
Identities = 856/935 (92%), Gaps = 12/935 (1%)
Strand=Plus/Plus
Query 1 CCAATCCAAAACATTTCAAAGACAAATCAAATTCGTAAGATATGGCCGGTCTTCGAGCGA 60
||||||||||||||| |||| |||||||||||||||||| ||||| ||||||| |||||
Sbjct 3 CCAATCCAAAACATTCCAAACACAAATCAAATTCGTAAG--ATGGCGGGTCTTCAAGCGA 60
Query 61 AGACGTTAATATTCGTTCTGGTGGCCGCGTTAGCGACTCTAGATCACACATTTGTGGAGG 120
|||||||||| |||||||||| || || ||||||||||| | || ||||||||||||||
Sbjct 61 AGACGTTAATGTTCGTTCTGGCAGCTGCCTTAGCGACTCTTGGTCGCACATTTGTGGAGG 120
Query 121 CAGACTTCA-TCAAGAATATGATAGTTACATGGGGCCAAGATCATATTGGT-ATGACTGG 178
||||||||| | |||||| | || ||||||||||| ||||||| | || | |||| |||
Sbjct 121 CAGACTTCAGT-AAGAATTTTATTGTTACATGGGGTAAAGATCACA-TGTTCATGAATGG 178
Query 179 TGA-CAACCTTAAG-CTTGTCCTAGACCAATCTGCAGGATCTGCTATCCGATCAAAGGTG 236
| | ||||||| | |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 179 T-ACCAACCTT-CGACTTGTCCTAGACAAATCTGCAGGATCTGCTATTAAATCAAAGGTG 236
Query 237 GCTCATTTGTTTGGAAGCGTAGAAATGTTCCTCAAACTTGTGCCTGGGGATTCTGCTGGA 296
||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||||||
Sbjct 237 GCTCATTTGTTTGGAAGCGTAGAAATGCTCATCAAACTTGTGCCAGGGAATTCTGCTGGA 296
Query 297 ACCGTTGTAGCCTATTACTTATCATCTACGGGAACTGCACACGATGAGATAGACTTTGAG 356
||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||| |||
Sbjct 297 ACCGTTGCAGCCTATTACTTATCGTCTACGGGAAGTACACACGATGAGATAGACTTCGAG 356
Query 357 TTCCTAGGAAATGCGACTGGTGAGCCGTACACGATCCACACCAACTTATATGTTCAAGGG 416
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 357 TTCCTAGGAAATGCGACTGGTCAGCCGTACACGATCCACACCAACTTATATGCTCAAGGG 416
Query 417 AAAGGAAACCGAGAGCAACAATTCCGGCCATGGTTCAACCCGACCACTGGTTTCCACAAC 476
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 AAAGGAAACCGCGAACAACAATTCCGGCCATGGTTCAACCCGACCAATGGTTTCCACAAC 476
Query 477 TATACCATCCATTGGAACCCATCCGAAATTGTGTGGTTCGTCGATGGAACTCCGATCAGA 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 TATACCATCCATTGGAACCCATCCGAAGTTGTGTGGTTCGTCGATGGAACTCCGATCAGA 536
Query 537 GTTTTTAGGAACTACGAGAA-AGAAGGAATCGCATACCCGAACAAGCAAGGTATGAAAGT 595
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTTTAGAAACTACGA-AAGTGAAGGAATCGCATACCCGAACAAGCAAGGTATGAAAGT 595
Query 596 GTTTGCCAGTCTATGGAACGCAGACGATTGGGCAACACAAGGAGGTCGAGTGAAGACTAA 655
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 596 GTTTGCGAGTCTATGGAACGCAGAAGACTGGGCAACACAAGGAGGTCGAGTGAAGACTAA 655
Query 656 CTGGACGCTAGCACCATTTGTGGCCGAGGGTCGTAGGTACAGGGCAAGAGCTTGCTTGTG 715
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 656 CTGGACGCTAGCACCATTTGTGGCCGAGGGTCGTAGGTACAAGGCAAGAGCTTGTTTGTG 715
Query 716 GCAGGGATCAGTCAGCATCAAGCAATGCGCAGACCCAACTGTGCCGTCTAATTGGTGGAC 775
| ||||||||||||||||||||||||| | ||| |||||| | | |||||||||||||||
Sbjct 716 GAAGGGATCAGTCAGCATCAAGCAATGTGTAGATCCAACTATACGGTCTAATTGGTGGAC 775
Query 776 ATCACCATCGTTTAGCCAGCTCACTACTTTGCAGCTCACAAAGATGCAAAAGATAAGAGA 835
||||||||| ||||| ||||||||| ||| |||||| || ||||||||||||||||||||
Sbjct 776 ATCACCATCATTTAGTCAGCTCACTGCTTCGCAGCTGACGAAGATGCAAAAGATAAGAGA 835
Query 836 TGGTTTCATGATCTATGATTATTGCAAGGACACTAACAGGTTTGGAGGTGTTATGCCTCC 895
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 836 TGGTTTCATGATCTATGATTATTGCAAGGACACTAACAGATTTAAAGGTGTTATGCCTCC 895
Query 896 TAAATGCTCGAAGCAGCAATTCTAATTAAAGTTTC 930
||||||||||| ||||||||||||| |||||||
Sbjct 896 GGAATGCTCGAAGAAGCAATTCTAATTCAAGTTTC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5