BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491875 Length=699 Score E Sequences producing significant alignments: (Bits) Value AT4G28830.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1147 0.0 AT3G30122.1 | Symbols: | pseudogene similar to peptide chain r... 99.0 5e-20 > AT4G28830.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:14232446-14234042 FORWARD LENGTH=796 Length=796 Score = 1147 bits (621), Expect = 0.0 Identities = 673/699 (96%), Gaps = 0/699 (0%) Strand=Plus/Plus Query 1 AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42 AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT 101 Query 61 AAAGTGGAATTGGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 AAAGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT 161 Query 121 GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCTGATTTTGGTTGTGGCTGT 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 162 GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCGGATTTTGGTTGTGGCTGT 221 Query 181 GGTACTTTAAGTGCTGCTGCTGCTCTTTTAGATGCAGCGTCTGTGATTGGATTTGATATC 240 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| Sbjct 222 GGTACTTTAAGTGCTGCTGCTGCTCTTCTAGATGCTGCGTCTGTGATTGGATTCGATATC 281 Query 241 GACCCTGAGTCTCTTGAAACAGCAACACTAAATGCTGAGGAACTTGAGGTTGAGATAGAT 300 |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 282 GACCCTGAATCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAGGTCGAGATAGAT 341 Query 301 TTTGTTCAGTGTGACATTACAAAGTTGGAGTTAAAAGGCCTGATTGTTGATACGGTTGTA 360 || |||||||||||||| |||||| | |||||||||||||||||||| |||||||||||| Sbjct 342 TTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAGGCCTGATTGTGGATACGGTTGTA 401 Query 361 ATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA 420 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 402 ATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA 461 Query 421 ATGAAGGTCGCCTCAAAAGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 462 ATGAAGGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT 521 Query 481 AAAAGGGCGTATTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTCTATGTGAGCTCCGA 540 ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 522 AAAAGGGCGGCTTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTATATGTGAGCTCCGA 581 Query 541 TATGACTTGCCTAAACTCTACAAGTTCCACAAGCGAAAAGAAGTCGATATTGCTGTTGAT 600 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 582 TATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTTGATATTGCCGTTGAT 641 Query 601 CTCTGGCGTTTTGAGCCTAGATAGAGCTAGACCGCCACGATCATGTAATGTTTAGCTTTG 660 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 642 CTCTGGCGTTTTGAGCCTAGACAGAACTAGACCGCCACGATCATGTAATGTTTAGCTTTG 701 Query 661 AGATAAGCTTGATTATGTATGGAGGGATTCATGATATGA 699 ||||||| ||||||||||||||| ||||||||| ||||| Sbjct 702 AGATAAGATTGATTATGTATGGAAGGATTCATGGTATGA 740 > AT3G30122.1 | Symbols: | pseudogene similar to peptide chain release factor protein | chr3:11758491-11760858 REVERSE LENGTH=2368 Length=2368 Score = 99.0 bits (53), Expect = 5e-20 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 343 ATTGTTGATACGGTTGTAATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGA 398 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 ATTGTTGATACTGTTGTAATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGA 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33857815078 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5