BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491875
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28830.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1147 0.0
AT3G30122.1 | Symbols: | pseudogene similar to peptide chain r... 99.0 5e-20
> AT4G28830.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:14232446-14234042
FORWARD LENGTH=796
Length=796
Score = 1147 bits (621), Expect = 0.0
Identities = 673/699 (96%), Gaps = 0/699 (0%)
Strand=Plus/Plus
Query 1 AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT 101
Query 61 AAAGTGGAATTGGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 AAAGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT 161
Query 121 GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCTGATTTTGGTTGTGGCTGT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 162 GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCGGATTTTGGTTGTGGCTGT 221
Query 181 GGTACTTTAAGTGCTGCTGCTGCTCTTTTAGATGCAGCGTCTGTGATTGGATTTGATATC 240
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 222 GGTACTTTAAGTGCTGCTGCTGCTCTTCTAGATGCTGCGTCTGTGATTGGATTCGATATC 281
Query 241 GACCCTGAGTCTCTTGAAACAGCAACACTAAATGCTGAGGAACTTGAGGTTGAGATAGAT 300
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 282 GACCCTGAATCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAGGTCGAGATAGAT 341
Query 301 TTTGTTCAGTGTGACATTACAAAGTTGGAGTTAAAAGGCCTGATTGTTGATACGGTTGTA 360
|| |||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||
Sbjct 342 TTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAGGCCTGATTGTGGATACGGTTGTA 401
Query 361 ATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 402 ATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA 461
Query 421 ATGAAGGTCGCCTCAAAAGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 ATGAAGGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT 521
Query 481 AAAAGGGCGTATTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTCTATGTGAGCTCCGA 540
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 522 AAAAGGGCGGCTTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTATATGTGAGCTCCGA 581
Query 541 TATGACTTGCCTAAACTCTACAAGTTCCACAAGCGAAAAGAAGTCGATATTGCTGTTGAT 600
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 582 TATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTTGATATTGCCGTTGAT 641
Query 601 CTCTGGCGTTTTGAGCCTAGATAGAGCTAGACCGCCACGATCATGTAATGTTTAGCTTTG 660
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 642 CTCTGGCGTTTTGAGCCTAGACAGAACTAGACCGCCACGATCATGTAATGTTTAGCTTTG 701
Query 661 AGATAAGCTTGATTATGTATGGAGGGATTCATGATATGA 699
||||||| ||||||||||||||| ||||||||| |||||
Sbjct 702 AGATAAGATTGATTATGTATGGAAGGATTCATGGTATGA 740
> AT3G30122.1 | Symbols: | pseudogene similar to peptide chain
release factor protein | chr3:11758491-11760858 REVERSE LENGTH=2368
Length=2368
Score = 99.0 bits (53), Expect = 5e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 343 ATTGTTGATACGGTTGTAATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGA 398
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 ATTGTTGATACTGTTGTAATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5