BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491877
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28780.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1759 0.0
> AT4G28780.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:14215545-14217579 FORWARD LENGTH=1582
Length=1582
Score = 1759 bits (952), Expect = 0.0
Identities = 1200/1316 (91%), Gaps = 32/1316 (2%)
Strand=Plus/Plus
Query 23 TAGATCATGTCCACATTTCTCCTAACATGGATTTTTATG-TCGGCAGCGTTATGCGTAAC 81
||||||||||||||||||||||||||||||||| ||||| || | |||||| |||||||
Sbjct 53 TAGATCATGTCCACATTTCTCCTAACATGGATTATTATGACCGTC-GCGTTAAGCGTAAC 111
Query 82 G-TTAATTCTTATGCCGCAACAAACAAACGCGGCTCGAGCGTTCTTTGTGTTTGGCGACT 140
| || |||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 112 GCTT-TTTCTTATGCCGCAACAAACAAATGCGGCTAGAGCGTTCTTCGTGTTTGGCGACT 170
Query 141 CACTCGTGGACAGTGGTAATAACAATTACTTAGTCACCACCGCTCGTGCCGATTCTCCGC 200
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 171 CACTCGTGGACAGTGGTAATAACAATTACTTAGTCACCACTGCTCGTGCCGATTCTCCAC 230
Query 201 CGTATGGAATCGATTATCCGACCGGTCGACCAACTGGTCGTTTCTCCAACGGCTTGAACC 260
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 231 CGTATGGAATCGATTATCCGACTGGTCGACCAACCGGTCGTTTCTCCAACGGCTTGAACC 290
Query 261 TCCCTGACATCATCAGTGAACAAATTGGATCTGAGCCTACATTACCAATTCTTAGCCCTG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCCCTGACATCATCAGTGAACAAATTGGATCTGAGCCTACATTACCAATTCTTAGCCCTG 350
Query 321 AGCTCACCGGAGAGAAGCTATTGATCGGAGCTAACTTTGCCTCTGCCGGCATTGGAATAC 380
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 351 AACTCACTGGAGAGAAGCTATTGATCGGAGCTAACTTTGCCTCTGCCGGCATTGGAATTC 410
Query 381 TCAACGATACTGGCGTTCAATTTTTGAACATACTAAGGATCGGTAGGCAATTCGAGCTGT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCAACGATACTGGCGTTCAATTTTTGAACATACTAAGGATCGGTAGGCAATTCGAGCTGT 470
Query 441 TCCAAGAGTATCAAGAGAGAGTGAGTGAGATTATAGGTTCAGACAAAACACAACAGCTTG 500
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 471 TCCAAGAGTATCAAGAGAGAGTGAGTGAGATTATAGGTTCAGACAAAACGCAACAGCTTG 530
Query 501 TAAACGGGGCTCTTGTCCTCATGACTCTCGGTGGCAACGATTTCGTCAACAACTACTTCT 560
|||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 531 TAAATGGGGCTCTCGTCCTCATGACTCTCGGCGGCAATGATTTCGTCAACAACTACTTCT 590
Query 561 TTCCCATCTCTTCTAGAAGACGCCAATCATCTCTCGGTGAATTTAGCCAGCTTCTCATCT 620
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCCCCATCTCTACTAGAAGACGCCAATCATCTCTCGGTGAATTTAGCCAGCTTCTCATCT 650
Query 621 CAGAATACAAGAAAATCCTAACGAGGCTGTATGAGTTGGGAGCGAGGAGGGTCATGGTGA 680
| ||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||
Sbjct 651 CCGAATACAAGAAAATCCTGACGAGTCTTTATGAGTTGGGAGCAAGGAGGGTGATGGTGA 710
Query 681 CGGGAACAGGACCGTTGGGTTGCGTACCAGCCGAGCTTGCCTCATCCGGAAGTGTGAATG 740
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 711 CGGGAACAGGACCTTTGGGTTGCGTACCAGCGGAGCTTGCCTCATCGGGAAGTGTGAATG 770
Query 741 GAGAATGTGCACCCGAGGCTCAACAGGCTGCAGCAATATTCAATCCGCTTTTGGTTCAAA 800
||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct 771 GAGAATGTGCACCCGAGGCGCAACAGGCTGCAGCAATCTTCAATCCTCTTTTAGTTCAAA 830
Query 801 TGCTTCAAGGACTTAACCGTGAGATTGGTTCTGATGTTTTCATTGGGGCTAATGCCTTTA 860
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 831 TGCTTCAAGGACTTAACCGTGAGATTGGTTCTGATGTTTTCATCGGGGCTAATGCCTTTA 890
Query 861 ATACAAATGCGGATTTCATCAACAATCCCCAAAGATTTGGTTTTGTGACGTCAAAGGTAG 920
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 891 ACACGAATGCGGATTTCATCAACAATCCCCAAAGATTTGGTTTTGTGACGTCAAAAGTAG 950
Query 921 CATGCTGCGGGCAAGGAGCATACAACGGGCAAGGCGTTTGTACCC-AGTTGTCAAGCCT- 978
|||| || || ||||||||||||||||||||||||||||| |||| | ||||| | | |
Sbjct 951 CATGTTGTGGACAAGGAGCATACAACGGGCAAGGCGTTTGCACCCCA-TTGTCGA-CTTT 1008
Query 979 ATGCCCTGACCGCAATGCCTATGCTTTCTGGGACCCTTTCCACCCAACCGAGAAAGCCAC 1038
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1009 ATGCTCTGACCGCAATGCCTATGCTTTCTGGGACCCTTTCCACCCGACCGAGAAAGCCAC 1068
Query 1039 TCGACTCATCGTCCAACAAATCATGACTGGTTCCATTGAATACATGAACCCCATGAACCT 1098
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1069 CCGACTCATCGTCCAACAAATCATGACTGGTTCGGTTGAGTACATGAACCCCATGAACCT 1128
Query 1099 TAGTACCATCATGGCTTTAGACTCCAGAATATAATCAAGGAAGTAATCTTTTTTCAGAAT 1158
|||||| || ||||||||||||||||||||||||| ||||| | |||||||| ||||||
Sbjct 1129 TAGTACTATTATGGCTTTAGACTCCAGAATATAATTAAGGATGCAATCTTTTA-CAGAAT 1187
Query 1159 ATGTTATATCAGTGAA-C-C-TA-GCA-AACAATGTTAAG-GTACTG--AGG-ATTGTTT 1209
| || | |||| | | || | | || ||| | | || ||| | | || |
Sbjct 1188 CTATT-TC-CAGTTTTTCTCGTATG-ATAA-AATATCGCGAGT-CTGCCAAACAATGGTA 1242
Query 1210 TTGTTA-TCAA--ATCTCTCTTCTTCGTCTAAATTAGGGATTTCTTAATTTCTCTCTAAT 1266
| | | || || ||| || ||| | |||||| || ||||||| ||||||||||||
Sbjct 1243 AGGA-ACT-AAGGAT-TCTATTTTTC--C-AAATTATGGTTTTCTTAGTTTCTCTCTAAT 1296
Query 1267 GGTAATGGAGAGTCTCTGTCTCAGCTCTGTTTTTTCTGTTATGTTTCAATTTTGTG 1322
| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1297 GCTAATGGGGAGTCTCTGTCTCGGCTCTGTCTTTTCTGTTATGTTTCAATTTTGTG 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65059906320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5