BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491881
Length=3337
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28760.1 | Symbols: | Protein of unknown function (DUF3741)... 4649 0.0
AT4G28770.2 | Symbols: | Tetraspanin family protein | chr4:142... 244 3e-63
> AT4G28760.1 | Symbols: | Protein of unknown function (DUF3741)
| chr4:14207465-14212050 FORWARD LENGTH=3318
Length=3318
Score = 4649 bits (2517), Expect = 0.0
Identities = 2865/3034 (94%), Gaps = 20/3034 (1%)
Strand=Plus/Plus
Query 312 TTACAGGGAACAGAATGAATGAAGTCCGAGGCAGAAAGGCTCAAAAGATTGAAAGTCCAG 371
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 291 TTACAGGGACCATAATGAATGAACTCCGAGGCAGAAAGGCTCAAAAGATTGAAAGTCCAG 350
Query 372 TTCCAGGATGCTTAGGGAAGATGGTTAACCTATTTGATCTTGGAACAGCTGTTAATGGGA 431
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 351 TTCCAGGATGCTTAGGGAAGATGGTTAACCTATTTGATCTAGGAATTGCTGTTAATGGGA 410
Query 432 ACAAGTTACTTACAGATAAACCACATCTTCATGGATCCTCTCTCTCAAGAAGTCGATCTG 491
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 411 ACAAGTTGCTTACAGATAAACCACATCTTGATGGATCCTCTCTGTCAAGAAGTCGATCTG 470
Query 492 ATGTGACTCGAACGCCAAGCCCCTCTTATAAAGGCCATTCAGAAGCTGAATTGATTATGT 551
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 471 ATGTGACTCGAATGCCAGGCCCTTCTTATAAAGGCCATTCAGAAGCTGAATTGATTATGT 530
Query 552 CTGATTTGAGGAGAAGTGCTTCTAGCAAAGTAAGTGGTACACCGATGAAGAAACTCATTG 611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 CTGATTTGAGGAGAAGTGCTTCTAGCAAACTAAGTGGTACACCGATGAAGAAACTCATTG 590
Query 612 CTCGAGAAATGTCAAAAGAAGTAGAACATAAACAGAGCCCAACTAATGTGGTTGCTAAGT 671
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 591 CTCGAGAAATGTCAAAAGAAGTTGAACATAAACAGAGCCCAACTAATGTGGTTGCTAAGT 650
Query 672 TGATGGGTTTGGAAACATTTCCCCAGACATATCCTGAGACTGCTACACAGCGAAGCAAAT 731
||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 651 TGATGGGTTTGGAAACACTTCCCCAGACGCATCAGGAGACTGCTACACAGCGAAGCAAAT 710
Query 732 CCAGAAGCAATTCACACTCTTCTCTGAATCATTCGGTGACTTCTATGGATAATGAGGTCC 791
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 711 CCAGAAGCAATTCACACTCTTCTCTGAATCATTCGATGACTTCTACAGATAATGAGGTTC 770
Query 792 AAAAGTATCAGGAGTTCAGTAGGGAATTTAAAGATGTGTATGAAACGTGGCAGTCGCCTC 851
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 771 AAAAGTATCAGGATTTCAGTAGGGAATTTAAAGATGTGTATGAAACATGGCAGTCACCTC 830
Query 852 AGAAGATGAGTCGGTCAAGGGATAGCTCGCCTAGAAAAGGAAGATATAATGAAAGTACGA 911
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 831 AGAAGGTGAGTCGCTCAAGGGATTGCTCGCCTAGAAAAGGAAGATATGATGAAAGTACGA 890
Query 912 CTGAGAAACAAATGGCTCTTGTTCGTCAAAAGTTCTCAGAAGCAAAACGCCTTGTAACAG 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CTGAGAAACAAATGGCTCTTGTTCGTCAAAAGTTCTCAGAAGCAAAACGCCTTGTAACAG 950
Query 972 ATGACAGTCTTCACCAATCCAAAGAGTTCCAAGATGCACTTGAAGTTTTAAGCTCCAACA 1031
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 951 ATGATAGTCTTCACCAATCCAAAGAGTTCCAAGATGCACTTGAAGTGTTAAGCTCGAACA 1010
Query 1032 AGGATTTATTTGTTCAATTTCTCCAGGAATCAAATTCCTTCTCTCAGCAGAATCTTTCTG 1091
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1011 AGGATTTGTTTGTTCAATTTCTCCAGGAATCAAATTCTTTCTCTCAGCAGAATCTTTCTG 1070
Query 1092 ACTTTCACCATGTTCCTCCTCATTCAGAAGCAAAGCGAATCACAGTATTGAGACCTTCAA 1151
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1071 ACTTTCACCATGTTCCTCCTCATTCAGAGGCGAAGCGGATCACAGTATTGAGACCTTCAA 1130
Query 1152 AGGCTGTTGAAACTGAAAAATTTGTGGTTCAAGGCAGGAAGAACAAGCAGGTTAAGAAAT 1211
|||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 1131 AGGCTGGTGAAACTGAAAAATATGTGGTTCAAGGGAGGAGGAACAAGCAGGTTAAGAAAT 1190
Query 1212 TGGCTTCATCCAGTCAAGAAACTGGATGGGGGAACCGTGATCTGGGTTACCCGTCATCTT 1271
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1191 TGGCTTCATCAAGTCAAGAGACTGGATGGGGGAACCGTGATCTGGGTTACCCGTCACCTT 1250
Query 1272 ATGTCAACCGGGGAACCGAGGAACACACTGTACAGCCAACCCGAATTGTCGTCTTGAAGC 1331
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ATGTCAACCGGGGAACCGAAGAACACACTGTACAGCCAACCCGAATTGTCGTCTTGAAGC 1310
Query 1332 CTAGTATAGGCAAGTCACTAGATATTAAGGCTGTTTCATCATCCCAATCCTCTCCAAGGG 1391
||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1311 CTAGTCTAGGAAAGTCTCTAGATATTAAGGCTGTATCATCATCCCAATCCTCTCCAAGGG 1370
Query 1392 GTTTACACGGTGGGGGATATTTTGATGAGCCTGGAGATGTTGAGACTAAAGAAGTTGCAA 1451
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1371 GTTTACACAGTAGGGGATATTTTGATGAGCCTGAAGATGTTGAGACTAAAGAAGTTGCAA 1430
Query 1452 AGGAAATTACTCGTCAAGTGCGCGAAAATTTGATGGGTCACCACAGGAACGAGACTCAGT 1511
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1431 AGGAAATTACTCGTCAAGTGCGCGAAAATCTGATGGGTCACCACAGGAACGAGACTCAGT 1490
Query 1512 CTTCTTCTGTCCTATCCAATGGTTATATCGGTGATGACAGTTCTTTTAACAAGTCTGATA 1571
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1491 CTTCTTCTGTCCTATCCAATGGCTATATCGGTGATGACAGTTCTTTTAATAAGTCTGATA 1550
Query 1572 ATGAAGATCTAGTGGGAAATCTTAGCGACTCTGAGATCATGTCACCAGCATCTAGGCATT 1631
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1551 ACGAAGATTTAGTGGGAAATCTTAGCGATTCTGAGATCATGTCACCAGCATCTAGGCATT 1610
Query 1632 CTTGGGACTGTCCAAATCGGTTTGAAAGTCTTTTCTCTCCTTCCTCTTTCAGCAGAGCTT 1691
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1611 CTTGGGACTGTCCAAATAGGTTTGACAGTCTTTTCTCTCCTTCCTCTTTCAGCAGAGCTT 1670
Query 1692 CATATTCTCCAGAGTCATCTGTCTGCAGAGAGGCGAAAAAGCGACTTTCTGAAAGATGGG 1751
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1671 CATTTTCTCCAGAGTCATCTGTCTGCAGAGAGGCGAAGAAGCGACTTTCTGAAAGATGGG 1730
Query 1752 CGTTGATGTCAGTAACGGGAAGAACTCAACCGCTTAAACATGTTTCAAGAACCTCAAGCA 1811
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CGTTGATGTCAGTATCGGGAAGAACTCAACCGCTTAAACATGTTTCAAGAACCTCAAGCA 1790
Query 1812 CCTTAGGGGAAATGCTTGCACTAACAGAGACCAAAGTGACAACTGAATCCGAGGAAGGGA 1871
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1791 CCTTAGGGGAAATGCTTGCACTTACAGAGACCAAAGTGACAACTGAATCCGGGGAAGGGA 1850
Query 1872 GCAATGAAATAGCACCAGCCACGAGGGTATCAACATCATGCATAACTAGTGATCTTAGTC 1931
|| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1851 GCTATGAAATAGTACCAGCAACGAGGGTATCAACATCATGCATAACTAGTGATCTGAGTC 1910
Query 1932 AAGTGGAAATGGCAAGTGATTCTCTGAATAAACTTGCAAGGTCAAAATCAGTCTCTGACG 1991
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1911 AAGTGGAAATGGCAAGTGATTCTCTGAATATTCTTGCAAGGTCAAAATCAGTCTCTGACG 1970
Query 1992 TTAGACTCAACGGAGAAACATCTATTTTGGGAACTTCCAAAGCACAGGCTCCACGAGAGC 2051
||||||||||||||||||||||| || |||| | |||||||| |||||||||||||||||
Sbjct 1971 TTAGACTCAACGGAGAAACATCTGTTCTGGGGAGTTCCAAAGTACAGGCTCCACGAGAGC 2030
Query 2052 TGACTAAGACGGGAAGCCTGAAATCGTCATGGAAAGTCTCGAATTTGTTCTTCTTTAAGA 2111
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2031 TGACTAAGACGGGAAGCCTGAAATCGTCATGGAAAGTCTCAAACTTGTTCTTCTTTAAGA 2090
Query 2112 ATAATAAAGCAAGCAAGGAGAAAAAAGGTGCATCTCAATGCAGCAGTATGTCACATTTAG 2171
|||||||||||||||||||||||| || |||||||||||||||||||||||| || || |
Sbjct 2091 ATAATAAAGCAAGCAAGGAGAAAAGAGATGCATCTCAATGCAGCAGTATGTCTCAATTGG 2150
Query 2172 CAAAGCCTTCTCCTGCGACTCTTACCGGACAAACCAGCGAAGATTGTTTGTTTCCTAGAG 2231
|| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 2151 CAGCGCCTTCTCCTGTGACTCTTACCGGAAAAACCAGCGAAGATTGTGTGTTTCCTATTG 2210
Query 2232 ATTGTCTCCCTCCTGATGCATCGGTACATCAAAGCATAATCCCAGGCGAGGAGGAAGTGA 2291
||||||||||||||| | |||| | ||| ||||| ||||||| |||||||||||||||||
Sbjct 2211 ATTGTCTCCCTCCTGTTTCATCAGAACAGCAAAGTATAATCCTAGGCGAGGAGGAAGTGA 2270
Query 2292 CTACACCAAAGCCCCTAGCGACTGGGAATACAAGTGAAAACCAGGACCAGCCGAGTCCAA 2351
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2271 CTACACCAAAGCCCCTAGCGACTGGGAATACAAGTGAAAACCAGGACCAGCCAAGTCCAA 2330
Query 2352 TTTCGGTTTTGCTTCCACCATTTGAAGAGGAA-GATGTCAGCATTCCAGAATGTTCTGGG 2410
||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 2331 TTTCGGTTTTGTTTCCACCATTTGAAGAGGAATG-TGCCAGCATTCCAGAATGTTCTGGG 2389
Query 2411 TCAACC-AGACATTGGACATCTCAAGGAGAGGAAGTGTCTCTTAAATCTAATCTAATCGA 2469
|||||| || |||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2390 TCAACCAAG-CATTGGTCATCTCAAGGAGACGAAATGTCTCTTAAATCTAATCTAATCGA 2448
Query 2470 CAAATCACCACCAATCGGGTCAATTGCTCGGATCCTCTCATGGGATGATGACTCTTGCAC 2529
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2449 CAAATCACCACCAATCGGGTCAATTGCTCGGCTCCTCTCATGGGATGATGACTCTTGCAC 2508
Query 2530 AGACAACATATCTAAACCAGCAATGGGAGTCCATGAGGATGAAGACTGGTATCTCTTCTT 2589
||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||| |
Sbjct 2509 TGACAACATAGCTAAACCCGCAATGGGAGTCCATGAGGAGGAAGACTGGCATCTCTTCAT 2568
Query 2590 AGAAATGATCTTGACAGCTGCTGGCTTCAGCAGTGGTTGCACGGTTTCTCATGACCCTC- 2648
||||||||||||||||||||| || |||||||||||||||| || ||||||||||| |
Sbjct 2569 AGAAATGATCTTGACAGCTGCAGGTTTCAGCAGTGGTTGCATAGTCTCTCATGACCC-CA 2627
Query 2649 TCATGTCACGATGGCACTTGCCAAACAGTCCCTTAGACTCTTCGCTCAGAGACAAATACA 2708
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 2628 TCATGTCACGATGGCACATGCCAAACAGTCCCTTAGACCCTTCACTCAGAGACAAATACA 2687
Query 2709 CCAACCCAGATAACAACAACATCAAGGAGTTCATCCACGAAGGCAAACGCAGACAACAGC 2768
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2688 CCAACCCGGATAACAACAACATCAAGGAGTTCATCCACGAAGGCAAACGCAGACAACAAC 2747
Query 2769 GATCAACTCGTAAGCTCATTTTCGACCGCATCAACTCCATCATTTTAGAAACAACGATTA 2828
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 2748 GATCAACTCGTAAGCTCATTTTCGACCGCATCAACTCCATCGTTTCAGAAACAACGACTA 2807
Query 2829 CGCTCCCGGGCAATGGTTCTCCGCATTTCGACCTGGTGGAGCATGTGTGGGCCCACTTAA 2888
| | | | || |||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 2808 CACGCACAGGTAATGGTTCTCTGCATTTCGACCTGGTGGAGCATGTGTGGGCTCAGTTAA 2867
Query 2889 AGGACTGGGTTTCAGATGAGCCTAGCAAGCGTGACTCAGGTGAGGACACGGACGCCAACA 2948
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 2868 AGGACTGGGTTTCAGATGAGCCTAGCAAGCGTGACTCAGGAGAAGACATGGACGCCAACA 2927
Query 2949 GTTTGGCTGCAGAGAGTCTTGTGAAGGACGAGATAGTCGGGAGGACATGGACTCATAGCT 3008
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 2928 GTTTGGCTGCAGAGAGTCTAGTGAAAGATGAGATAGTCGGGAGGACATGGACTCATAGCT 2987
Query 3009 TGCAAGTTGAAATAGACGACTTTGGGATTGAAATTGAAAAGAGATTGTTGCAAGAGCTAG 3068
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2988 TGCAAGTTGAAATAGATGACTTTGGGATTGAAATTGAAAAGAGATTGTTGCAAGAGCTAG 3047
Query 3069 TAGAGGAAGCCGTTATCGATCTTACACGATGAGATGAGACAAGAGCAACAATATATACTA 3128
||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 3048 TAGAGGAAGCCGTTATCGATCTTACACGATGAGATGAGACAGGAGCAATA-TATATACTA 3106
Query 3129 CGTTGAATAAAAATGTATGATAGTGTTAAGTTTAttttttt--G-TCTATGGGAAGATTT 3185
|||| |||||||||||| ||||||| |||||| |||||||| | |||||||||||||||
Sbjct 3107 CGTTCAATAAAAATGTAAGATAGTGCTAAGTTCATTTTTTTTTGGTCTATGGGAAGATTT 3166
Query 3186 GTGTCTCGAtttttttGTAATGATTGAGAGAGAAAACAAAATGCTGTGTAGCCATTGTTG 3245
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3167 GTGTCTCGATTTTTTTGTAATGATTGAGAGAGAAAACAGAATGCTGTGTAGCCATTGTTG 3226
Query 3246 AAGCAGAGCAATAAGCAGTTGTTCCCATTTTAACCACA--TCTCGTTACTCTTTTGTACA 3303
|||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||
Sbjct 3227 AAGCAGAGCAATAAGCAGTTGTTCCCATTTCAAACACAAATCTCGTAACTCTTTTGTACA 3286
Query 3304 CAGACACACCGAAATGAAAGCTATGTTGCGATCT 3337
| || | || ||||||||||||||||||||
Sbjct 3287 C---CA-A---AA-TGAAAGCTATGTTGCGATCT 3312
Score = 124 bits (67), Expect = 4e-27
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 142 AGAGGGAGATTTGGCTAACTTCATCTCCGGCGGGCATC-TTCTCCGGCGGAGTTTCCGAT 200
|||| ||||||||||| |||| |||||||||||||||| || ||||||||||||||||||
Sbjct 198 AGAGAGAGATTTGGCTTACTTTATCTCCGGCGGGCATCTTTTTCCGGCGGAGTTTCCGAT 257
Query 201 GTATCTACTCTAGCTA-GCTCAGCTC 225
|||||||||||||||| |||||||||
Sbjct 258 GTATCTACTCTAGCTAAGCTCAGCTC 283
> AT4G28770.2 | Symbols: | Tetraspanin family protein | chr4:14211855-14213969
REVERSE LENGTH=1373
Length=1373
Score = 244 bits (132), Expect = 3e-63
Identities = 177/196 (90%), Gaps = 13/196 (7%)
Strand=Plus/Minus
Query 3147 GATAGTGTTAAGTT--TAttttttt-GTCTATGGGAAGATTTGTGTCTCGAtttttttGT 3203
||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1371 GATAGTGCTAAGTTCATTTTTTTTTGGTCTATGGGAAGATTTGTGTCTCGATTTTTTTGT 1312
Query 3204 AATGATTGAGAGAGAAAACAAAATGCTGTGTAGCCATTGTTGAAGCAGAGCAATAAGCAG 3263
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AATGATTGAGAGAGAAAACAGAATGCTGTGTAGCCATTGTTGAAGCAGAGCAATAAGCAG 1252
Query 3264 TTGTTCCCATTTTAACCACA--TCTCGTTACTCTTTTGTACACAGACACACCGAAATGAA 3321
|||||||||||| || |||| |||||| |||||||||||||| || | || ||||
Sbjct 1251 TTGTTCCCATTTCAAACACAAATCTCGTAACTCTTTTGTACAC---CA-A---AA-TGAA 1200
Query 3322 AGCTATGTTGCGATCT 3337
||||||||||||||||
Sbjct 1199 AGCTATGTTGCGATCT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166052581330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5