BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491882
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28750.1 | Symbols: PSAE-1 | Photosystem I reaction centre s... 931 0.0
AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr... 339 3e-92
> AT4G28750.1 | Symbols: PSAE-1 | Photosystem I reaction centre
subunit IV / PsaE protein | chr4:14202758-14203961 REVERSE
LENGTH=698
Length=698
Score = 931 bits (504), Expect = 0.0
Identities = 635/694 (91%), Gaps = 26/694 (4%)
Strand=Plus/Plus
Query 4 CAATCAAGAACCACTCTTTCGTGTCGGAATAACAATaagaaagaaagaaaaagaaaagaa 63
|||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 11 CAATCAAGAACCACTCTTTCGTGTCGCAATAACAATAAGAAAGAAAG----A-AAAAG-- 63
Query 64 aaaaaCCAGAGATGGCAATGACGACAGCATCTACGGTGTTTGTTCTGCCTGCCAACGTCA 123
||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 64 -AAAACCAGAGATGGCGATGACGACAGCATCTACGGTATTTGTTCTACCGGCCAATGTCA 122
Query 124 CCTCGGCCGCCGGCGCTTCGTCGTCCAGGAACTCCGTGTCTTTCTTGCCGATGAGAAACG 183
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 CCTCGGTCGCCGGCGCTTCGTCGTCCAGGAGCTCCGTGTCTTTCTTGCCGATGAGAAACG 182
Query 184 CCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATGCGGCTCCGGCAACCTCTTCATCGG 243
||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||
Sbjct 183 CCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATCCTGCTCCGGCTTCCTCTTCTTCAA 242
Query 244 AAGGTTCTCCGGCAGCTGCCGCTGCTCCGGCTGGAGCTGCTGCCACCAAACCCAAGCCAC 303
||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 243 AAGATTCTCCGGCAGCTGCCGCTGCTCCGGATGGAGCTACTGCCACCAAACCCAAGCCAC 302
Query 304 CTCCAATTGGCCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGT 363
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CACCGATTGGTCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGT 362
Query 364 TCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCGAAGACCCGATACCCGGTTG 423
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 363 TCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCTAAGACTCGATACCCGGTTG 422
Query 424 TGGTTCGGTTCGCGAAAGTGAATTATGCCAACATATCGACCAACAACTATGCATTGGACG 483
|||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 423 TGGTCCGGTTCGCAAAAGTCAATTACGCCAACATATCGACCAACAACTATGCATTGGATG 482
Query 484 AGGTCGAAGAAGTTGCAGCTTAAATGGGAGAATTCAAAAACT--GTGTATTCAATACCGG 541
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 483 AGGTCGAAGAAGTTGCAGCTTAAATGGGAGAATTCAAAAACTCTGTGTATTCTATACCGG 542
Query 542 TCTATCCGTTTGTAACATGACCCGAACCGTATGTACCG-AAAAGTTTACCAATTATTTCT 600
| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 543 TTTATCCGTTTGTAACTTGACCCAAACCGTATGTACCGCAAAAGTTTACCAATTATTTCT 602
Query 601 CCTCATCTGAATCTCGAGCCGGTTTTCTTATT-TTT-------TG-------AAAATTCA 645
|||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 603 CCTCATCTGAATCTCGAGCCGGTTTTCTTATTCTTTCACAGAATGTGTTTGGAAAATTCA 662
Query 646 GTTAAAAGTCTCTTTCTAATCATGGTTAGCTCTC 679
|||||||||||||||||| |||||||||||||||
Sbjct 663 GTTAAAAGTCTCTTTCTACTCATGGTTAGCTCTC 696
> AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736734-8737767
FORWARD LENGTH=607
Length=607
Score = 339 bits (183), Expect = 3e-92
Identities = 291/343 (85%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 159 GTGTCTTTCTTGCCGATGAGAAACGCCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGAT 218
|||||||||||||||||||||| | |||||| ||||| |||||||| || || ||||||
Sbjct 137 GTGTCTTTCTTGCCGATGAGAAGCTTCGGTTCAAGGCTAGTAGTCAGAGCGGCGGAAGAT 196
Query 219 GCGGCTCCGGCAACCTCTTCATCGGA-AGGTTC-TCCGGCA--GCTGCCGCTGCTCCGGC 274
| ||||||||||| | || ||||| | |||| ||| || ||||| |||||||||||
Sbjct 197 ACACCTCCGGCAACCGCCTCGTCGGATA-GTTCTTCCACCACCGCTGCTGCTGCTCCGGC 255
Query 275 TG-GAGCTGCTGCCACCAAACCCAAGCCACCTCCAATTGGCCCTAAGAGAGGGTCTAAGG 333
| || | | ||| | || | || || |||||||||||||| |||||||| || ||||
Sbjct 256 -GAAAGTTCCGGCCGCTAAGGCTAAACCTCCTCCAATTGGCCCAAAGAGAGGATCCAAGG 314
Query 334 TCAAGATTCTAAGGAGAGAATCCTATTGGTTCAAGAACGTTGGATCAGTTGTTGCCGTTG 393
||||||||||||||| |||||| || |||| ||||||||||||||||||||| |||||||
Sbjct 315 TCAAGATTCTAAGGAAAGAATCATACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTG 374
Query 394 ATCAGGACCCGAAGACCCGATACCCGGTTGTGGTTCGGTTCGCGAAAGTGAATTATGCCA 453
|||||||||||||||||||||| ||||||||||| |||||||| || |||||||| || |
Sbjct 375 ATCAGGACCCGAAGACCCGATATCCGGTTGTGGTCCGGTTCGCCAAGGTGAATTACGCGA 434
Query 454 ACATATCGACCAACAACTATGCATTGGACGAGGTCGAAGAAGT 496
| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 435 ATATATCGACCAACAACTACGCATTGGACGAGGTGGAAGAAGT 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5