BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491884
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28730.1 | Symbols: | Glutaredoxin family protein | chr4:14... 1042 0.0
> AT4G28730.1 | Symbols: | Glutaredoxin family protein | chr4:14199096-14200901
FORWARD LENGTH=792
Length=792
Score = 1042 bits (564), Expect = 0.0
Identities = 677/729 (93%), Gaps = 17/729 (2%)
Strand=Plus/Plus
Query 1 ACGTCACGAGACAAATTAGCA-CGCAaag-aagacgaagaagaagaagaagaagCTCCAA 58
||||||||||||||||||||| || | | || | |||||||||||||||||||||||||
Sbjct 1 ACGTCACGAGACAAATTAGCATAGC-ACGCAA-A-GAAGAAGAAGAAGAAGAAGCTCCAA 57
Query 59 GAATCTGTCGCAGAAATCGCCATGGCAGTCACAGCATTTAACCCATTGAAACTTGCATCG 118
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 58 GAATCTGTCGCAGAAATCGCCATGGCAGTCACAGCATTTAACACATTGAAACTTGTATCG 117
Query 119 TCGTCTCTAGATCCGAttccttcaatctcttcttcttcttcttattcattctctttgata 178
||||||||||||||||||||||| | || |||| |||||||||||| |||||| |||||
Sbjct 118 TCGTCTCTAGATCCGATTCCTTC-A-GTC-TCTTGTTCTTCTTATTCCTTCTCTCTGATA 174
Query 179 tctgtcggatcttctttcAAGAGAAGTCTAAAGCAGTCATGTTCTGTTCGAGCCATGtct 238
| |||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 175 TATGTCGGATCTCCTTACAAGAGATGTCTAAAGCAGTCATGTTCTGTTCGAGCTATG--- 231
Query 239 tcttcttcttcttcggctgcttcatcttcttcttcttcttccttcGGATCGAGAATGGAA 298
|||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||
Sbjct 232 ACTTCTTCTTCTTCGGCTG---CATCGTCTTCTTCTTCGTCCTTTGGATCGAGAATGGAA 288
Query 299 GAGAGCGTGAGGAAAACAGTGACTGAGAACACTGTCGTTGTTTACTCCAAAACTTGGTGC 358
||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 289 GAGAGTATTAGGAAAACAGTGACTGAGAACACTGTCGTTATTTACTCCAAAACTTGGTGC 348
Query 359 TCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTATT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 349 TCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTGTT 408
Query 419 GAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACT 468
Query 479 GGGCAACACACTGTTCCTAATGTTTTTGTCGGAGGCAAGCACATTGGTGGCTGTACAGAT 538
|||||||||||||||||||||||||| || | |||||||||||||||||||| ||||||
Sbjct 469 GGGCAACACACTGTTCCTAATGTTTTCGTATGTGGCAAGCACATTGGTGGCTGCACAGAT 528
Query 539 ACAGTGAAGCTTAACAGGAAAGGAGATCTGGAAGTGATGTTAGCTGAAGCCAACGGTAAA 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 529 ACAGTGAAGCTTAACAGGAAAGGAGATCTGGAACTGATGTTAGCTGAAGCCAACGGTAAA 588
Query 599 A-CTGGTCAGTCTTGAGGAGGTGATGAAACTGGTTCGGAGATTTT-GCATATGGAGCTTG 656
| | |||||| |||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct 589 AAC-GGTCAGAGTTGAGGAGATGTTGAAACTGGTTCGGAGATTTTTGCATACGGAGCTTG 647
Query 657 GAAAGTTTTCTCATTTTCGTTATTATCATTGTACCTCATTTGAATACAATAATCATAGTT 716
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 648 GAAAGTTTTCTCATTTTTGTTATTATCATTGTACCTCATTTGAATACAATAATTATAGTT 707
Query 717 AATAAATAA 725
|||||||||
Sbjct 708 AATAAATAA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5