BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491885
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28720.1 | Symbols: YUC8 | Flavin-binding monooxygenase fami... 2708 0.0
> AT4G28720.1 | Symbols: YUC8 | Flavin-binding monooxygenase family
protein | chr4:14192583-14194256 FORWARD LENGTH=1674
Length=1674
Score = 2708 bits (1466), Expect = 0.0
Identities = 1616/1686 (96%), Gaps = 19/1686 (1%)
Strand=Plus/Plus
Query 1 ACCATTTCCAATACAACCTT-CATTGATtctctctctctctctctctctctctACTAAAA 59
|||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct 1 ACCATTTCCAATACAA-CTTCCATTGA-----T-TCTCTCTCTCTCTCTCTCTACTAAAA 53
Query 60 CCTTCAAATTCTCTTTCTCTCAATAAATCGTTACAGAAAGTT-TAAAACAAGAATGGAGA 118
| ||||||||||||| || ||||| | | ||| ||||| || ||||| |||||||||||
Sbjct 54 CTTTCAAATTCTCTTACTTTCAAT-ACTTATTAAAGAAACTTATAAAAAAAGAATGGAGA 112
Query 119 ATATGTTTCGTTTGATGGATCAAGATCAGGATTTAAC-AACTAACCGGTGCATTTGGGTC 177
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 113 ATATGTTTCGTTTGATGGATCAAGATCAGGATTTAACTAA-TAACCGGTGCATTTGGGTC 171
Query 178 AACGGACCGGTCATCGTCGGAGCAGGACCGTCGGGGTTAGCGACGGCGGCTTGTCTCCAT 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 172 AACGGACCGGTCATCGTCGGAGCTGGACCGTCGGGGTTAGCGACGGCGGCTTGTCTCCAT 231
Query 238 GAACAAAACGTTCCTTTCGTTGTTCTTGAGAGAGCAGATTGTATTGCTTCTCTTTGGCAA 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 232 GAACAAAACGTTCCTTTCGTTGTTCTCGAGAGAGCAGATTGTATTGCTTCTCTATGGCAA 291
Query 298 AAACGTACTTACGATCGTCTCAAGCTTCACCTGCCTAAGCAGTTTTGTCAGTTACCGAAA 357
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 292 AAACGTACTTACGATCGTCTCAAGCTTCACCTTCCTAAGCAGTTTTGTCAATTACCGAAA 351
Query 358 ATGCCCTTCCCGGAGGATTTCCCGGAGTACCCTACGAAGCGTCAGTTCATCGACTACCTT 417
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 352 ATGCCCTTCCCTGAGGACTTCCCGGAGTACCCGACGAAGCGTCAGTTCATCGACTACCTT 411
Query 418 GAGTCTTACGCAACCCGGTTCGAGATCAACCCCAAGTTCAACGAGTGTGTACAGACCGCT 477
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 412 GAGTCTTACGCTACCCGGTTCGAGATCAACCCTAAGTTCAACGAGTGTGTGCAGACTGCT 471
Query 478 CGGTTCGATGAGACCAGTGGCTTGTGGCGAGTCAAGACCGTGTCGAAGAGTGAGTCGACT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGGTTCGATGAGACCAGTGGCTTGTGGCGAGTCAAGACCGTGTCGAAGAGTGAGTCGACT 531
Query 538 CAGACCGAGGTCGAGTATATTTGCCGGTGGCTTGTGGTGGCTACTGGAGAAAATGCGGAG 597
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 CAGACCGAGGTCGAGTATATTTGCCGGTGGCTTGTGGTGGCTACGGGAGAAAATGCGGAG 591
Query 598 AGAGTGATGCCGGATATTGATGGACTTTCTGAGTTTTCCGGTGAGGTGATTCACGCTTGT 657
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 AGAGTGATGCCGGAGATTGATGGTCTTTCTGAGTTTTCCGGTGAGGTGATTCACGCTTGT 651
Query 658 GATTACAAGTCCGGCGATAAATTCGCCGGGAAAAAAGTTCTAGTCGTTGGTTGTGGAAAC 717
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 652 GATTACAAGTCCGGCGAGAAATTCGCCGGGAAAAAAGTTCTCGTCGTTGGTTGTGGAAAC 711
Query 718 TCCGGCATGGAAGTTTCTCTTGACCTAGCAAACCATTTCGCTAAGCCTTCCATGGTCGTA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TCCGGCATGGAAGTTTCTCTTGACCTAGCAAACCATTTCGCTAAGCCTTCCATGGTCGTG 771
Query 778 AGAAGCTCCCTTCACGTGATGCCGAGGGAAGTAATGGGTAAATCAACGTTTGAGCTTGCA 837
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGAAGCTCTCTTCACGTGATGCCGAGGGAAGTAATGGGTAAATCAACGTTTGAGCTTGCA 831
Query 838 ATGAAGATGTTAAGATGGTTTCCTCTATGGTTAGTCGACAAGATATTGTTGGTTTTGAGC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 832 ATGAAGATGTTAAGATGGTTTCCTCTATGGTTAGTCGACAAGATATTGTTGGTTTTAAGT 891
Query 898 TGGATGGTTCTTGGAAACATCGAGAAATACGGTTTGAAACGACCCGAGATGGGTCCAATG 957
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 892 TGGATGGTTCTTGGAAACATCGAGAAATACGGTTTGAAACGACCAGAGATGGGTCCAATG 951
Query 958 GAGCTAAAGAGCGTGAAAGGCAAGACACCGGTGCTTGACATCGGAGCTATAGAGAAGATC 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GAGCTAAAAAGCGTGAAAGGCAAGACACCGGTGCTTGACATCGGAGCTATAGAGAAGATC 1011
Query 1018 CGGTCAGGAAAGATCAACGTGGTTCCAGGGATCAAAAGGTTTAACGGTAACCAAGTCGAA 1077
|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1012 CGGTTAGGAAAGATCAACGTGGTTCCAGGGATCAAAAGGTTTAACGGAAACAAAGTCGAA 1071
Query 1078 CTTGTCAATGGAGAACAACTAGACGTAGACTCAGTTGTTCTAGCTACTGGCTATCGCAGT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1072 CTTGTCAATGGAGAACAACTAGACGTAGACTCAGTTGTTCTAGCTACTGGTTACCGCAGC 1131
Query 1138 AACGTCCCATATTGGCTACAAGAGAACGAGTTCTTTGCAAAGAATGGTTTCCCGAAGACA 1197
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1132 AACGTCCCATATTGGCTACAAGAGAATGAGTTCTTTGCAAAGAATGGTTTCCCAAAGACA 1191
Query 1198 GTAGCTGACAACAATGGTTGGAAAGGAAGGACAGGATTGTATGCGGTTGGGTTTACGAGG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GTAGCTGACAACAATGGTTGGAAAGGAAGGACAGGATTGTATGCGGTTGGGTTTACGAGG 1251
Query 1258 AAAGGGCTCTCAGGTGCGGCAATGGACGCGGTTAAAATCGCACAAGACATTGGCTCTGTT 1317
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 1252 AAAGGGCTCTCAGGTGCGTCAATGGACGCGGTTAAGATCGCACAAGACATAGGCTCTGTT 1311
Query 1318 TGGAAACTTGAAACAAAACAACCCACAAAACGCTCAAGGGGTTCTCTTCGAAGATGTATC 1377
||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1312 TGGCAACTTGAAACAAAACAACCCACGAAACGCTCAAGGGGTTCTCTTCGAAGGTGTATC 1371
Query 1378 TCTCAACAGTTCTAATTTTTAGGaaaaaaa-GATTAGAGTTTTAGGACAGAGATCGCTGA 1436
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1372 TCTCAACAGTTCTAATTTTTAGGAAAAAAAAGATTAGAGTTTTAGGACAGAGATCACTGA 1431
Query 1437 CAAAAGAGAAGAGCCCTCTCCTGAAGACCCAAAGTGAATCAAAGGGTGTTGTGCGTGttt 1496
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1432 CAAAAGAGAAGAGCCCTCTCCTGAAGACCCAAAGCGAATCAAAGGGTGTTGTGCGTGTTT 1491
Query 1497 ttttGTTACCTCCTCCACTT-GTTGTTTTGGGCGTTTTGTGTAAACAGAGGAAGATGTGG 1555
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1492 TTTTGTTACCTCCTCCACTTAGT-GTTTTGGGCGTTTTGTGTAAACAGAGGAAGATGTGG 1550
Query 1556 CCttttgttttcta-ttttt-actatctttttttttacatacttttttaacaattatttt 1613
|||||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 1551 CCTTTTGTTTTCTACTTTTTTACAATCTTTTTTTTTACATACATTTTTAACAATTATTTT 1610
Query 1614 tttgggggtgggttctttgattttttttGTACAAGTTTATGTTAACATTTATATTGTATA 1673
|| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1611 TT-GGGGGTGGGTTCTTTGATTTTTTT-GTACAAGTTTATGTTAACATCTATATTGTATA 1668
Query 1674 CACTTT 1679
||||||
Sbjct 1669 CACTTT 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5