BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491889
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28706.4 | Symbols: | pfkB-like carbohydrate kinase family ... 1832 0.0
> AT4G28706.4 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr4:14167730-14172454 FORWARD LENGTH=1598
Length=1598
Score = 1832 bits (992), Expect = 0.0
Identities = 1181/1271 (93%), Gaps = 17/1271 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCACTCGTTGACCaaaaaaaaaCCctctctctctctctGTCACTCAGAAATGCT 60
|||||| ||||||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct 28 TCTCTCACACTCGTTGACCAAAAAAAAA-----ACTCTCTCT-T-TCACTGAGAAATGCT 80
Query 61 CTGCTTCACTCATGTCCCACCTCTTCCTCTCTTTTCCACCTCCGGTATCTATCTTCCGGC 120
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 81 CTGCTTCACTCATGTCCCACCTCTTCCTCTGTTCTCCACCTCCGGTATCTATCTTCCGGC 140
Query 121 CT-CACGACGATTCACAAGTTTCAGGACTAGAATG---TCTTCTTCCTCCGTAGACTCTG 176
|| || |||||||||| |||||||||| ||||||| |||||||||||| | || ||||
Sbjct 141 CTCCA-GACGATTCACTAGTTTCAGGATTAGAATGTCTTCTTCTTCCTCCATCGATTCTG 199
Query 177 TTCCTCCTCCGCCGGATAATGCCATCGTCCTTGGTTGTGGTGGCATCGCTGTAGATTTCC 236
|||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 200 TTCCTCCTCCACCGGATAACGCAATCGTCCTTGGTTGTGGTGGAATCGCTGTAGATTTCT 259
Query 237 TAGCGACTGTGGATTCTTATCCTCAACCTGACGATAAGATCCGAAGCACTAGTCTAAAGG 296
||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 260 TAGCGACGGTGGATTCTTATCCTCAAGCTGACGACAAGATCCGAAGCACTAGCCTAAAGG 319
Query 297 TGCAAGGAGGTGGAAATGCTGCAAATGCGTTAACTTGTGCTGCTCGTTTGGGATTGAATT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TGCAAGGAGGTGGAAATGCTGCAAATGCGTTAACTTGTGCTGCTCGTTTGGGATTGAATT 379
Query 357 CGAGACTGATTAGTAAGGTAGCGAACGACTCTCAAGGAAAGGGTATGTTGGAGGAGCTTG 416
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 380 CGAGACTGATTAGTAAGGTAGCGAATGACTCTCAAGGAAAAGGCATGTTGGAGGAGCTTG 439
Query 417 AAGCTGATGGTGTGGATACTTCCTTTCTTGTGGTCTCTAAAGAGGGCAATTCACCATTTA 476
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 440 AAGCTGATGGTGTGGATACTTCTTTTATTGTGGTCTCTAAAGAGGGTAATTCACCATTTA 499
Query 477 CCTATATCATAGTTGACAACCAAACGAAAACGCGTACTTGTATTCACACGCCTGGAGAcc 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CCTATATCTTAGTTGACAACCAAACGAAAACGCGTACTTGTATTCACACGCCTGGAGACC 559
Query 537 cccccATGTTACCAACTGAACTTTCTCAATCGAGCATGTTCTCAGCTCTAGACAGAGCAA 596
| || |||||||||||||| |||||||||||||| ||| | ||||| |||||| |||| |
Sbjct 560 CACCTATGTTACCAACTGACCTTTCTCAATCGAGTATGCTATCAGCGCTAGACCGAGCCA 619
Query 597 GCATTGTATACTTTGATGTAAGATTACACGAAACGGCCTTGGTGATTGCAAAAGAGGCAA 656
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 620 GCATTGTATACTTTGATGTAAGATTACACGAAACAGCTTTGGTTATTGCAAAAGAGGCAA 679
Query 657 GTCGCAAGAAGATACCTATTCTAGTTGATACAGAGAAGAAAAGAGATGGTTTAGATGAAC 716
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 680 GTCGCAAGAAGATACCTATTTTAGTTGATACAGAGAAAAAAAGAGATGGTTTAGATGATC 739
Query 717 TCTTGCAATTCGCCGACTACGCTGTCTGCTC-AGCAAAATT-CCCTCAGACATGGACAGA 774
|||||| |||||||||||||| |||||| || || |||||| ||||||||||||||||||
Sbjct 740 TCTTGCCATTCGCCGACTACGTTGTCTG-TCCAG-AAAATTTCCCTCAGACATGGACAGA 797
Query 775 GGTGTCTTCAACTCCTGGTGCACTTGTTTCCATGTTGTTGAGATTGCCTAAACTGAAATT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AGTGTCTTCAACTCCTGGTGCACTTGTTTCCATGTTGTTGAGATTGCCTAAACTGAAATT 857
Query 835 TGTGATCGTGACCTTGGGTGAAGAAGGATGCTTAATGGTTCAAAGAGCTTCAACAGCAGA 894
|||||||||||||| |||||| | || ||||||||||||||||||||||||| ||||||
Sbjct 858 TGTGATCGTGACCTCAGGTGAACATGGGTGCTTAATGGTTCAAAGAGCTTCAAAAGCAGA 917
Query 895 AGTATTTGAATCTCAAGAGATAGACATTGAGAGCTTGTTGGAGACACTGAAGCATAGAAA 954
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 918 AGTATTTGAATCTCAAGAGACAGACATTGAAAGCTTGTTGGAGACACTGAAGCATAGAAA 977
Query 955 AGACTCAACCACAACATTTCCAACATGTGTTTCGTCGGAGACAGCAAAACTGAAGGCCAA 1014
||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 978 AGACTCAACGACAACATTTCCAACATGTGTTTCATCGGAGACAACAAAGCTGAAGGCCAA 1037
Query 1015 TGGGGTAGGAACAGTGACCGGAAGATTATTTCTTGGAACAGCAGAGAAAATTCCTCCAGA 1074
|||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1038 CGGGGTAGGAACAATGACCGGAAGATTGTTTCTCGGAACAGCGGAGAAAATTCCTCCAGA 1097
Query 1075 CGAGCTTGTAGACACCACCGGTGCCGGCGATGCATTCATAGGAGCAGTTCTATATGCCAT 1134
||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1098 AGAGCTTGTAGACACCACTGGTGCTGGCGATGCATTCATAGGAGCTGTTCTATATGCCAT 1157
Query 1135 ATGCGCGGGCATGCCCCCAGAGAAAATGTTACCGTTTGCTGCTCAAGTGGCTGGCTGCAG 1194
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1158 ATGCGCCGGCATGCCCCCAGAGAAAATGTTACCATTTGCTGCTCAAGTGGCTGGTTGCAG 1217
Query 1195 CTGTCGAGCTATGGGAGCTCGCACTGGTCTTCCTCACCGTGCAGATCCTAGACTTGTACC 1254
||| || ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1218 CTGCCGGGCTTTGGGAGCTCGCACGGGTCTTCCTCACCGTACAGATCCTAGACTTGTACC 1277
Query 1255 CTTTCTG-GTT 1264
||||||| |||
Sbjct 1278 CTTTCTGAGTT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5