BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491890

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28703.1 | Symbols:  | RmlC-like cupins superfamily protein ...   640    0.0  


> AT4G28703.1 | Symbols:  | RmlC-like cupins superfamily protein 
| chr4:14166269-14166928 FORWARD LENGTH=550
Length=550

 Score =  640 bits (346),  Expect = 0.0
 Identities = 407/435 (94%), Gaps = 10/435 (2%)
 Strand=Plus/Plus

Query  1    ACACACTCTCATACTTATCTCCTTTTTACGTTTCTCATTTCTCTCCTCTCTTT-GAAAAT  59
            |||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||||
Sbjct  1    ACACACTCTCATACTTATCTCC-TCTTAGGTTTCTCATTTCTCTCGTCTCTTTGGAAAAT  59

Query  60   AAAAACAT-TTGATTAGAAATAAAGGAGATCATAATAAATGGCAGATCAACATCCAAGAA  118
            |||||  | ||||| ||||||||||||||  | ||||||||||||||||| |||||||||
Sbjct  60   AAAAA-TTGTTGATCAGAAATAAAGGAGAAAAGAATAAATGGCAGATCAAAATCCAAGAA  118

Query  119  TCATCGTCGAGAAAAACCCATCTCAAGTTCGTCTTGATGAACTAAAGTTCAAGTCATGGC  178
            ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct  119  TCATCGTCGAGCAAAACCCATCTCAAGCTCGTCTTGACGAACTAAAGTTCAAGTCATGGC  178

Query  179  CCAAGTGGGGATGTTCACCAGGGAAATACCATTTGAAATATGAAGCAGAAGAGATATGTT  238
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  179  CCAAGTGGGGATGTTCACCAGGGAAGTACCATTTGAAATATGAAGCAGAAGAGATATGTT  238

Query  239  ACATTGTGAGGGGTAAAGTTAAGGTTTACCCTAAACCACcatcatcattatcatcatcat  298
            ||||| ||||||| ||||||||||||||||||||||||||| |  |   ||||||||| |
Sbjct  239  ACATTTTGAGGGGCAAAGTTAAGGTTTACCCTAAACCACCA-C--C---ATCATCATCGT  292

Query  299  cGGATGCAGAAGTTGAATGGTGTGTAGAGTTTGGGGCAGGTGATATTGTCACTTTTCCAA  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  CGGATGCAGAAGTTGAATGGTGTGTAGAGTTTGGGGCAGGTGATATTGTCACTTTTCCAA  352

Query  359  AGGGACTTTCTTGTACTTGGGATGTTTCTCTCTCTGTTGACAAACACTACATTTTCCTCT  418
            ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  353  AGGGACTTTCTTGTACTTGGGATGTATCTCTCTCTGTTGACAAGCACTACATTTTCCTCT  412

Query  419  CTTCTTAAtttttgt  433
            |||||||||||||||
Sbjct  413  CTTCTTAATTTTTGT  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22504897856


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5