BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491894
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28680.2 | Symbols: TYRDC, TYRDC1 | L-tyrosine decarboxylase... 2532 0.0
> AT4G28680.2 | Symbols: TYRDC, TYRDC1 | L-tyrosine decarboxylase
| chr4:14155248-14158716 FORWARD LENGTH=1814
Length=1814
Score = 2532 bits (1371), Expect = 0.0
Identities = 1620/1736 (93%), Gaps = 33/1736 (2%)
Strand=Plus/Plus
Query 1 ATGTTTTAAA-CCCAACATATGCATGACAGGGAATTTGGTaacggcaacggctacagcaa 59
||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATG-TTTAAACCCCAACATATGTATGACAGGGAATTTGGTACCGGCAACGGCTACAGCAA 59
Query 60 cggcaacggctacaccaacggcaacggcaacaacaacggcaacggctacaccaacggcaa 119
||| |||||||||||||| || |||||| | || || |||||| | ||||||||
Sbjct 60 CGGGAACGGCTACACCAATGGAAACGGC--C-AC-AC--CAACGG----A--AACGGCAA 107
Query 120 cggcaacagcatcggcaatggcaacgTTAATGTTAACGGAGAAGCTAACGGAGCGAAGGT 179
||| | |||||||||| ||||||||| ||||||| ||||||||||||| |||||
Sbjct 108 ---TTACA--A-CGGCAATGGCCACGTTAATGGTAACGGAAAAGCTAACGGAGCCAAGGT 161
Query 180 GATAAAGATGAAACCAATGGACAGTGAGTTGCTGAGAGAGCAAGGTCACATAATGGTCGA 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 162 GGTAAAGATGAAACCAATGGACAGTGAGTTGCTGAGAGAGCAAGGTCACATAATGGTTGA 221
Query 240 TTTTATTGCTGATTATTACAAAAACCTTCAAGACTCGCCTCAAGATTTCCCTGTTCTTTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 222 TTTTATTGCTGATTATTACAAAAACCTTCAAGACTCGCCTCAAGATTTCCCTGTTCTGTC 281
Query 300 CCAAGTTCAGCCTGGTTATCTCCGTGACATGTTGCCTGATTCAGCACCAGACCAACCTGA 359
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 282 CCAAGTTCAGCCTGGTTATCTCCGTGACATGTTGCCTGATTCAGCACCTGAACGACCTGA 341
Query 360 ATCGTTGAAAGAACTTCTCGACGACGTTTCGAAGAAGATAATGCCGGGGATAACTCATTG 419
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 342 ATCGTTAAAAGAACTTCTCGACGATGTTTCGAAGAAGATAATGCCGGGGATAACTCATTG 401
Query 420 GCAAAGCCCGAGTTACTTTGCGTACTATGCATCAAGCACGAGTGTGGCCGGATTCTTGGG 479
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 402 GCAAAGCCCGAGTTACTTTGCATACTATGCATCAAGCACGAGTGTGGCTGGATTCTTAGG 461
Query 480 AGAGATGCTCAACGCCGGCCTGAGCGTCGTCGGTTTCACTTGGCTCACTTCTCCTGCCGC 539
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 462 AGAGATGCTTAACGCCGGCCTGAGCGTCGTCGGTTTTACCTGGCTCACTTCTCCTGCCGC 521
Query 540 TACTGAGCTGGAAATCATCGTTCTTGATTGGCTTGCGAAATTGCTACAACTCCCTGACCA 599
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 522 TACTGAGCTCGAAATCATCGTTCTTGATTGGCTTGCTAAATTGCTACAACTCCCCGACCA 581
Query 600 TTTTCTCTCGACAGGAAATGGAGGAGGAGTGATCCAAGGGACAGGATGTGAAGCAGTGCT 659
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 582 TTTTCTCTCCACAGGAAATGGAGGAGGAGTAATCCAAGGGACAGGATGTGAAGCAGTGCT 641
Query 660 TGTGGTAGTGTTAGCTGCTAGAGACAGGATTTTGAAGAAAGTTGGCAAAACATTACTTCC 719
||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 642 TGTGGTAGTATTAGCTGCTAGAGACAGAATTCTGAAGAAAGTTGGCAAAACATTACTTCC 701
Query 720 TCGACTTGTTGTCTATGCCTCTGACCAAACCCATTCTAGTTTCCGAAAGGCTTGTCTGAT 779
|| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 702 TCAACTTGTTGTCTATGGCTCTGACCAAACCCATTCTAGTTTCCGAAAAGCTTGTCTGAT 761
Query 780 TGGTGGAATACATGAAGAAAACATTAGGCTGCTCAAAACTGATTCTTCCACGAACTATGG 839
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 762 TGGTGGGATACATGAAGAAAACATTAGGCTGCTCAAAACTGATTCTTCCACAAACTATGG 821
Query 840 AATGCCTCCAAAATCACTTGAAGAAGCTATTTCTCATGATCTCGCTGAGGGTTTTATCCC 899
|||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 822 AATGCCTCCAGAATCACTTGAGGAAGCTATTTCTCATGATCTCGCTAAGGGTTTTATCCC 881
Query 900 TTTCTTCATTTGTGCTACTGTTGGCACAACGTCTTCAGCGGCGGTTGATCCTTTGGTCCC 959
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 882 TTTCTTCATTTGTGCCACTGTTGGCACAACGTCTTCAGCAGCGGTTGATCCTTTGGTCCC 941
Query 960 ATTGGGGAAAATTGCAAAGAAATACGGGATATGGATGCACGTAGATGCAGCTTATGCAGG 1019
||||||||| || ||||||||||| ||||||||| |||| || |||||||||||||||||
Sbjct 942 ATTGGGGAACATCGCAAAGAAATATGGGATATGGTTGCATGTGGATGCAGCTTATGCAGG 1001
Query 1020 GAATGCGTGTATATGTCCAGAATATCGAAAATTTATTGACGGGATTGAAAACGCAGACTC 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GAATGCATGTATATGTCCAGAATATCGAAAATTTATTGACGGGATTGAAAACGCAGACTC 1061
Query 1080 CTTTAACATGAATGCTCATAAATGGTTATTTGCTAATCAAACTTGTTCACCTCTTTGGGT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTTAACATGAATGCTCATAAATGGTTATTTGCTAATCAAACTTGTTCACCTCTTTGGGT 1121
Query 1140 TAAGGATCGATACTCTCTCATTGATGCTCTCAAAACAAATCCCGAGTATCTAGAATTCAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TAAGGATCGATACTCTCTCATTGATGCTCTCAAAACAAATCCCGAGTATCTAGAATTCAA 1181
Query 1200 GGT-----TT-CTAAGAAAGATGCGGTCGTGAATTATAAAGATTGGCAAATTTCTCTCTC 1253
||| || | || |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1182 GGTCAAGGTTTCCAAAAAAGATACGGTCGTAAATTATAAAGATTGGCAAATTTCTCTCTC 1241
Query 1254 TCGGAGATTCAGATCGTTGAAGTTATGGATGGTTTTACGGCTCTATGGTTCAGAGAACTT 1313
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1242 TCGGAGATTCAGATCACTGAAGTTATGGATGGTTTTACGGCTCTATGGTTCCGAGAACTT 1301
Query 1314 GAGAAATTTTATAAGAGACCACGTCAATCTCGCTAAGCATTTTGAAGATTATGTAGCTCA 1373
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AAGAAACTTTATAAGAGACCATGTCAATCTCGCTAAGCATTTTGAAGATTATGTAGCTCA 1361
Query 1374 AGATCCACA-TTTTGAGGTTGTCACTACTCGATACTTTTCACTCGTTTGCTTTCGCCTTG 1432
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1362 AGATCCA-AGTTTTGAGGTTGTCACTACTCGGTACTTTTCACTCGTTTGCTTTCGCCTTG 1420
Query 1433 TGCCTGATGACGGCGATGAAGAG-AAGTGTAACGAACGGAACCGTGAACTGCTCGCCGCC 1491
||| | ||||||||||||||| || ||||||||||| |||||||||||||| || ||
Sbjct 1421 CGCCAGTTGACGGCGATGAAGACCAA-TGTAACGAACGTAACCGTGAACTGCTTGCGGCT 1479
Query 1492 GTTAACTCCACCGGCAAGATCTTCATCTCCCACACGGCTCTATC-GGATAAATTCATTTT 1550
||||||||||| |||||||| |||||||| |||||||||||||| ||| |||||| ||||
Sbjct 1480 GTTAACTCCACTGGCAAGATATTCATCTCTCACACGGCTCTATCTGGA-AAATTCGTTTT 1538
Query 1551 ACGATTTGCTGTTGGTGCACCGTTAACGGAGGAGAAGCATGTCACTGAAGCATGGCAGAT 1610
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1539 ACGATTTGCTGTTGGTGCACCGTTAACGGAAGAGAAGCATGTCACTGAAGCATGGCAGAT 1598
Query 1611 CATACAGAAACATGCCTCCAAATTTACCCGCAACGGCCATTATTAAGAATATTTCAAAAT 1670
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 1599 TATACAGAAACATGCCTCCAAATTTACACGCAACGACCATTATTAATAATATTTCAAAAG 1658
Query 1671 AAACCCACTATCTTTTT-ATTTTGCTCAATAAAGTCCTCTATCTTCAACGATTTCC 1725
||||||||||||||||| |||| | ||||||||||||| ||| |||||||||||||
Sbjct 1659 AAACCCACTATCTTTTTTATTTCGATCAATAAAGTCCTTTATTTTCAACGATTTCC 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5